View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_low_13 (Length: 453)

Name: NF16573_low_13
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_low_13
NF16573_low_13
[»] chr6 (13 HSPs)
chr6 (156-438)||(33669755-33670037)
chr6 (159-387)||(33698694-33698925)
chr6 (1-113)||(21117346-21117458)
chr6 (278-347)||(33678177-33678246)
chr6 (29-101)||(21305522-21305594)
chr6 (67-131)||(33670058-33670122)
chr6 (265-376)||(33690196-33690306)
chr6 (29-115)||(33678310-33678396)
chr6 (178-249)||(21248664-21248735)
chr6 (51-115)||(33698967-33699031)
chr6 (175-259)||(21201734-21201816)
chr6 (300-350)||(21201661-21201711)
chr6 (300-342)||(21248779-21248821)
[»] scaffold0016 (6 HSPs)
scaffold0016 (159-387)||(82238-82466)
scaffold0016 (156-244)||(89988-90076)
scaffold0016 (51-131)||(105518-105598)
scaffold0016 (53-115)||(82134-82196)
scaffold0016 (62-116)||(89842-89896)
scaffold0016 (385-438)||(82493-82546)
[»] scaffold0060 (1 HSPs)
scaffold0060 (57-116)||(30796-30855)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 156 - 438
Target Start/End: Complemental strand, 33670037 - 33669755
Alignment:
Q  156 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33670037 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtct 33669938  T
Q  256 ttttcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactacctct 355  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33669937 ttttcgttgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactacctct 33669838  T
Q  356 aaatattgtcacactaaataacggtcccttatgagaagtcttatgtcttcacatttattctccaaaatatacaagtacttgtt 438  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33669837 aaatattgtcacactaaataactgtcccttatgagaagtcttatgtcttcacatttattctccaaaatatacaagtacttgtt 33669755  T

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Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 159 - 387
Target Start/End: Complemental strand, 33698925 - 33698694
Alignment:
Q  159 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatc-aacttgtcttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||    
T  33698925 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctatacgataaaccaaagcaaacatgtcttt 33698826  T
Q  258 ttcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttctttt--ttatataagaaatcgacaaaccaatcaactactacctct 355  Q
    || ||| |||||||||| ||||||||| ||| ||||||||| ||||| |||||||||||  |||| |||||||| |||||||||||| ||||||||||      
T  33698825 tttgtcttttagaaaatggttccactaatgccacttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctac 33698726  T
Q  356 aaatattgtcacactaaataacggtcccttat 387  Q
    ||||| | |  |||||||||||||||||||||    
T  33698725 aaataatttatcactaaataacggtcccttat 33698694  T

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Target: chr6; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21117458 - 21117346
Alignment:
Q  1 agtactaacaattcataagtcgtttctatatacaaaactaaattccatacagataccctttaaagcttttctcttttgcataaagtcgagagggctttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21117458 agtactaacaattcataagtcgtttctatatacaaaactaaattccatacagataccctttaaagcttttctcttttgcataaagtcgagagggctttcc 21117359  T
Q  101 atgtgttcataga 113  Q
    |||||||||||||    
T  21117358 atgtgttcataga 21117346  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 33678246 - 33678177
Alignment:
Q  278 tccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaacta 347  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33678246 tccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatccacta 33678177  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 21305594 - 21305522
Alignment:
Q  29 tatacaaaactaaattccatacagataccctttaaagcttttctcttttgcataaagtcgagagggctttcca 101  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  21305594 tatacaaaactaaagtccataaagatacccttcaaagcttttctcttttgcataaagttgagagggctttcca 21305522  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 33670122 - 33670058
Alignment:
Q  67 ttttctcttttgcataaagtcgagagggctttccatgtgttcatagacacaccacatatacaact 131  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33670122 ttttatctcttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact 33670058  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 33690306 - 33690196
Alignment:
Q  265 tttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactacctctaaatattgt 364  Q
    |||||||||| ||||||||| ||| | | ||| | ||||||||||||||||||  |||||||||| ||||||| |||| ||||| ||||||||||| | |    
T  33690306 tttagaaaatggttccacta-tgccagtcccattactttctatatttctttttagtataagaaatggacaaactaatccactaccacctctaaataattt 33690208  T
Q  365 cacactaaataa 376  Q
    ||||||||||||    
T  33690207 cacactaaataa 33690196  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 33678396 - 33678310
Alignment:
Q  29 tatacaaaactaaattccatacagataccctttaaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagaca 115  Q
    |||||||| ||||| |||||  ||||| | || ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  33678396 tatacaaatctaaaatccatttagatatcgttcaaagcttttctctcttgcataaagtagagagggctttccatgtgttcattgaca 33678310  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 21248664 - 21248735
Alignment:
Q  178 gtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaac 249  Q
    |||||||| |||||||||||||||||||||||||||||||| |   ||||||||| ||||||| ||||||||    
T  21248664 gtccctttcatcccattctttactaattgaagcaacaattctacaatttcctatttgataaactaaatcaac 21248735  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 33699031 - 33698967
Alignment:
Q  51 agataccctttaaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagaca 115  Q
    ||||||||||  |||||||| ||||||||||||||| | ||||||||||||||||||||| ||||    
T  33699031 agatacccttccaagcttttttcttttgcataaagtagggagggctttccatgtgttcattgaca 33698967  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 21201816 - 21201734
Alignment:
Q  175 aaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtcttttt 259  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| | | ||  ||||| ||||||| ||| |||| |||||||||    
T  21201816 aaagtccattttaccccattctttactaattgaagcaacaattctacgatt--ctatttgataaactaaagcaacatgtcttttt 21201734  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 21201711 - 21201661
Alignment:
Q  300 ctttctatatttcttttttatataagaaatcgacaaaccaatcaactacta 350  Q
    |||||||||||||||||| ||||||| ||| ||||| |||||| |||||||    
T  21201711 ctttctatatttctttttaatataaggaatggacaagccaatcgactacta 21201661  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 21248779 - 21248821
Alignment:
Q  300 ctttctatatttcttttttatataagaaatcgacaaaccaatc 342  Q
    |||||||||||||||||||||||||| ||  ||||||||||||    
T  21248779 ctttctatatttcttttttatataaggaaaggacaaaccaatc 21248821  T

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Target: scaffold0016 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 82238 - 82466
Alignment:
Q  159 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtctttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||| ||||||||    
T  82238 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaaattttcctataagataaaccaaagcaacatgtctttt 82337  T
Q  259 tcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactacctctaaa 358  Q
    | ||| |||| |||||  |||||||| ||| ||||||||| ||||  |||||||||||||||||||||||| |||||||||||| | ||||||||  |||    
T  82338 ttgtcttttaaaaaatgattccactaatgccacttccactacttttaatatttcttttttatataagaaatggacaaaccaatccattactacctacaaa 82437  T
Q  359 tattgtcacactaaataacggtcccttat 387  Q
    || | |   ||||||||||||||||||||    
T  82438 taatttataactaaataacggtcccttat 82466  T

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Target: scaffold0016; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 89988 - 90076
Alignment:
Q  156 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaa 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||| |||||    
T  89988 ctagaacattaaagtttataaagtctcttttatcccattctttactatttgaagcaactatcccaagtttttctattcgataacccaaa 90076  T

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Target: scaffold0016; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 105598 - 105518
Alignment:
Q  51 agataccctttaaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagacacaccacatatacaact 131  Q
    ||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  105598 agatatccttcaaagcttttctctcttgcataaagtagagagggctttccatgtgttcatagacacgccacatacacaact 105518  T

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Target: scaffold0016; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 82134 - 82196
Alignment:
Q  53 ataccctttaaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagaca 115  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  82134 atacccttcaaaacttttctcttttgcataaagtagagagggctttctatgtgttcattgaca 82196  T

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Target: scaffold0016; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 89842 - 89896
Alignment:
Q  62 aaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagacac 116  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  89842 aaagcttttctcttttgcataaagtagagaggactttccatatgttcatagacac 89896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 82493 - 82546
Alignment:
Q  385 tatgagaagtcttatgtcttcacatttattctccaaaatatacaagtacttgtt 438  Q
    |||||||||||||||||||||||| |||||| |  |||||||  ||||||||||    
T  82493 tatgagaagtcttatgtcttcacaattattcccttaaatataggagtacttgtt 82546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 30796 - 30855
Alignment:
Q  57 cctttaaagcttttctcttttgcataaagtcgagagggctttccatgtgttcatagacac 116  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30796 ccttcaaaccttttctcttttgcataaagtcgagagggatttccatgtgttcatagacac 30855  T

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