View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_14 (Length: 450)
Name: NF16573_low_14
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 54 - 314
Target Start/End: Complemental strand, 33143427 - 33143179
Alignment:
| Q |
54 |
aaatatatgaaggatttcaatggaaggaaatgggacaagtttgatggcaaagaggttgcttcactcgaatatgcaaaaactcaaggaaaagatgcacatc |
153 |
Q |
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| T |
33143427 |
aaatatatgaaggatttcaatgggaggaaatgggacaagtttgatggcaaagaggttgcttcactcgaatatgcaaaa------------gatgcacatc |
33143340 |
T |
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| Q |
154 |
tagaggattattatcgcagggctccaaacttgatggaaagggaccagcagtttcgcccaatcgtcttttcaaagggccaagagcaggtattatttaactt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33143339 |
tagaggattattatcgcagggctccaaacttgatggaaagggaccagcagtttcgcccaatcgtcttttcaaagggccaagagcaggtattatttaactt |
33143240 |
T |
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| Q |
254 |
tgatctgtttgattatgtaatcttccggaattcctaatgttacattacattctcaagtatt |
314 |
Q |
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| T |
33143239 |
tgatctgttcgattatgtaatcttccggaattcctaatgttacattacattctcaagtatt |
33143179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 33143130 - 33143068
Alignment:
| Q |
370 |
aaagaaatatagcagctttacatgcctcaaacttgagagtgttctatgaacttcattcagaaa |
432 |
Q |
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| T |
33143130 |
aaagaaatatagcagctttacatgcctcaaacttgagagtgttctatgaacttcattcagaaa |
33143068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 33143490 - 33143445
Alignment:
| Q |
14 |
attattctgatagtttctattgaatctattgcatatgcttaaatat |
59 |
Q |
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| T |
33143490 |
attattctgatagtttctattgaatctattgcatatgcttaaatat |
33143445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 33139482 - 33139435
Alignment:
| Q |
353 |
gagaagaagaacagcaaaaagaaatatagcagctttacatgcctcaaa |
400 |
Q |
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| T |
33139482 |
gagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaa |
33139435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 33139421 - 33139389
Alignment:
| Q |
396 |
tcaaacttgagagtgttctatgaacttcattca |
428 |
Q |
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| T |
33139421 |
tcaaacttgagagtgttctatgaacttcattca |
33139389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 33143158 - 33143128
Alignment:
| Q |
316 |
aactttgaacaggataatatcattccacaaa |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33143158 |
aactttgaacaggataatatcattccacaaa |
33143128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 32342784 - 32342817
Alignment:
| Q |
396 |
tcaaacttgagagtgttctatgaacttcattcag |
429 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
32342784 |
tcaaacttgagagtgttctatgaacttccttcag |
32342817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 32349907 - 32349940
Alignment:
| Q |
396 |
tcaaacttgagagtgttctatgaacttcattcag |
429 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
32349907 |
tcaaacttgagagtgttctatgaacttccttcag |
32349940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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