View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_16 (Length: 429)
Name: NF16573_low_16
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_16 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 29904420 - 29904007
Alignment:
| Q |
15 |
gaaatgaaaactcaagtccataacgttgggtacatcacaattcagcttccttctgatatgagtgacagcggcatccccaagtcagttgatcagctatctg |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29904420 |
gaaatgaaaactcaagtccataacgttgggtgcatcacaattcagcttccttctgatatgagtgacagcggcatccccaagtcagtgaatcagctatctg |
29904321 |
T |
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| Q |
115 |
cagttctacattaccggttccatatgcatacacatcaaataactcatgtcagcatattgcataactgatgccttttctttttctgtcaaattaagatgcg |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29904320 |
cagttctacattaccagttccatatgcatacacatcaaataactcatgtcagcatattgcataactgatgccttttctttttctgtcaaattaagatgcg |
29904221 |
T |
|
| Q |
215 |
attaccaccaaatagttgcagtaataaatcaaaatatgagtaatttttaaccatgaaggaattcttaaaattgtttcagtaacgaatcttaacattctta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29904220 |
attaccaccaaatagttgcagtaataaatcaaaatatgagtaatttttaaccatgaaggaattctaaaaattgtttcagtaacgaatcttaacattctta |
29904121 |
T |
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| Q |
315 |
accaagaccaagcagtagatatattatgaaattccatgtaactatcatgaatagctaaatacaaagtacaatttcccacaggaggcaataccataggaat |
414 |
Q |
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| T |
29904120 |
accaagaccaagcagtagata-attatgaaattccatgtaactatcatgaatagctaaatacaaagtacaatttcccacaggaggcaataccataagaat |
29904022 |
T |
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| Q |
415 |
aatagctactcgtga |
429 |
Q |
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| T |
29904021 |
aatagctactcgtga |
29904007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 109 - 415
Target Start/End: Complemental strand, 29888092 - 29887776
Alignment:
| Q |
109 |
tatctgcagttctacattaccggttccatatgcataca-------catcaaataactcatgtcagcatattgcataactgatgccttttctttttctgtc |
201 |
Q |
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|||||||||| |||||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||||||||| |||| |||||||| ||||| |
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| T |
29888092 |
tatctgcagtcctacattaccagttccatatgcgtacatgctacacatcaaataactcgtgttagcatattgcataacccttgccatttcttttcctgtc |
29887993 |
T |
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| Q |
202 |
aaattaagatgcgattaccaccaaatagttgcagtaataaatcaaaatatgagt--aatttttaaccatgaaggaattcttaaaattgtttcagtaacga |
299 |
Q |
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|||| ||||| |||||| |||||||||||||||||||||||||||||| |||| |||| ||||||| ||| ||||| |||||| |||||| || || |
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| T |
29887992 |
aaatgaagatatgattacaaccaaatagttgcagtaataaatcaaaataggagtaaaattcttaaccaagaaaaaattcgtaaaatagtttcaccaatga |
29887893 |
T |
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| Q |
300 |
atcttaacattcttaaccaagaccaagcagtagatatattatgaaattcc-atgtaactatcatgaatagctaaatacaaagtacaatttcccacaggag |
398 |
Q |
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||||| | |||||||||||| |||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| || |
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| T |
29887892 |
atctttaaattcttaaccaataccaagcattagatatattatgaaattcctatgtaaccaccatgaatagctaaatacaaagtacaatttcccacaaaag |
29887793 |
T |
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| Q |
399 |
gcaataccataggaata |
415 |
Q |
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| T |
29887792 |
gtaataccataagaata |
29887776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 238 - 429
Target Start/End: Complemental strand, 29896612 - 29896429
Alignment:
| Q |
238 |
ataaatcaaaatatgagtaatttttaaccatgaaggaattcttaaaattgtttcagtaacgaatcttaacattcttaaccaagaccaagcagtagatata |
337 |
Q |
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||||||||||||| |||||||| | ||||| ||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||| |
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| T |
29896612 |
ataaatcaaaataggagtaattctaaaccaagaaagaattcataaaatagtttcagtagtgaatcttaacatccttaaccaagaccaagccgtagatata |
29896513 |
T |
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| Q |
338 |
ttatgaaattccatgtaactatcatgaatagctaaatacaaagtacaatttcccacaggaggcaataccataggaataatagctactcgtga |
429 |
Q |
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| T |
29896512 |
ttatgaaatt--------ctatcatgaatagcgaaatagaaagtacaatttcccacaagaggcaataccacaagaataatagcaactcgtga |
29896429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 29896758 - 29896657
Alignment:
| Q |
44 |
gtacatcacaattcagcttccttctgatatgagtgacagcggcatccccaagtcagttgatcagctatctgcagttctacattaccggttccatatgcat |
143 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| |
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| T |
29896758 |
gtacatcacagttcagcttccttctgataggagtgacagcggcatccccaagtcagttgatcagctatctacagtcctacattactggttccataagcat |
29896659 |
T |
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| Q |
144 |
ac |
145 |
Q |
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|| |
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| T |
29896658 |
ac |
29896657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 32095946 - 32096029
Alignment:
| Q |
310 |
tcttaaccaagaccaagcagtagatatattatgaaattcc-atgtaactatcatgaatagctaaatacaaagtacaatttccca |
392 |
Q |
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||||||||||||||||||| | |||||| |||||||||| | |||||| ||||||||||||||||| ||||| |||| |||| |
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| T |
32095946 |
tcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattgccca |
32096029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 29900492 - 29900424
Alignment:
| Q |
23 |
aactcaagtccataacgttgggtacatcacaattcagcttccttctgatatgagtgacagcggcatcccc |
92 |
Q |
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|||||||||||| || |||| | |||||| | ||||| ||||||||||||||||| |||| ||||||||| |
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| T |
29900492 |
aactcaagtccacaaggttgtg-acatcagagttcagtttccttctgatatgagtaacagtggcatcccc |
29900424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 4365941 - 4366021
Alignment:
| Q |
15 |
gaaatgaaaactcaagtccataacgttgggtacatcacaattcagcttccttctgatatgagtgacagcggcatccccaag |
95 |
Q |
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|||||||||||||||||||| || |||| |||||||| | ||||| |||||||| |||||||||| || |||||||||||| |
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| T |
4365941 |
gaaatgaaaactcaagtccacaaggttgtgtacatcagagttcagattccttcttatatgagtgatagtggcatccccaag |
4366021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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