View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_18 (Length: 398)
Name: NF16573_low_18
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 36547546 - 36547198
Alignment:
| Q |
22 |
gttgtaaagaacagttggagatcatattgttggaaattaaaaggagttagcaatagagtaatagtatactcctaccatgattgttacaggaaaatatagt |
121 |
Q |
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| T |
36547546 |
gttgtagagaactgttggagatcatattgttggaaattaaaaggagttagcaatagagtaatagtatactcctaccatgattgttacaggaaaatatagt |
36547447 |
T |
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| Q |
122 |
acaagaacttgtacaagacagaatttgcattggcttagcgcannnnnnnatgtaatattcataacaatcataggaattataaaagtagctacctgcaata |
221 |
Q |
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| T |
36547446 |
gcaaga------------cagaatttgcattggcttagcgcgtttttttatgtaatattcataacaatcataggagttataaaagtagctacatgcaata |
36547359 |
T |
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| Q |
222 |
aaagttcaaaatacacttaataataatgctagaatgctaaaaaattatccaagtggaaactatttattttaagagatttaaaagacgaagtggaaacagc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36547358 |
aaagttcaaaatacacttaataataatgctagaatgctaaaaaattatccaagtggaaactatttattttaagagatttaaaagacgaagtggaaacagc |
36547259 |
T |
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| Q |
322 |
gcggcactagaatttgtgctttaacttttatagagatgcatagaggatacatagatagaca |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36547258 |
gcggcactagaatttgtgctttaacttttatagagatgcatagaggatacatagatagaca |
36547198 |
T |
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