View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_19 (Length: 391)
Name: NF16573_low_19
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 181 - 391
Target Start/End: Original strand, 11177580 - 11177793
Alignment:
| Q |
181 |
atgttgaaaattatgaggatg---attataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
277 |
Q |
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| T |
11177580 |
atgttgaaaattatgaggatgatgattataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
11177679 |
T |
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| Q |
278 |
atgtttgtaagaagggatgtttaacgtaggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctctttatcttgtagtt |
377 |
Q |
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| T |
11177680 |
atgtttgtaagaagggatgtttaacataggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctcttgatcttgtagtt |
11177779 |
T |
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| Q |
378 |
gttgttttaatttt |
391 |
Q |
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| T |
11177780 |
gttgttttaatttt |
11177793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 11177366 - 11177534
Alignment:
| Q |
18 |
agaccgaagaagtcgtcgggttcaggttcgagtttgaataacaataataatagtaatgaattctttggtccattatgggggaaacaacgcaagggttgta |
117 |
Q |
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| T |
11177366 |
agaccgaagaaggcgtcgggttcaggttcgagtttgaataataataataatagtaatgaattctttggtccattatgggggaaacaacgcaagggtggta |
11177465 |
T |
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| Q |
118 |
aatatgaagatgaagataacaagggtgctataacattagcaactagtgatgaagataaggttaatgttg |
186 |
Q |
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| T |
11177466 |
aatatgaagatgaagataacaagggtgctataacattagctactagtggtgatgataaggttaatgttg |
11177534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 4703392 - 4703298
Alignment:
| Q |
198 |
gatgattataatgggaagaggagagtgaggaa-ccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaacatgtttgtaagaag |
291 |
Q |
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|||||| ||||||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4703392 |
gatgatgataatgggaagaggagaatgaggaaacccgtgaaagaaaggtcactaaaatcgttaatgtgaaatgaagctaacatgtttctaagaag |
4703298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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