View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_21 (Length: 381)
Name: NF16573_low_21
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_21 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 14378 - 14427
Alignment:
| Q |
238 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
287 |
Q |
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| T |
14378 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
14427 |
T |
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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 25456880 - 25456833
Alignment:
| Q |
238 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgag |
285 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25456880 |
atatcacgcatacaaaactcaatttctcattcgactaagctggatgag |
25456833 |
T |
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