View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_24 (Length: 371)
Name: NF16573_low_24
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 1183902 - 1184009
Alignment:
| Q |
6 |
tatactgttccatataacacttatccaactcataatatttttactgc-aatatttaagcaattcataaggtactatcgcttaattaattcctttggttgt |
104 |
Q |
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| T |
1183902 |
tatactgttccatataacacttatccaactcataatatttttatggtgaatatttaagcaattcataaggtaccatcgcttaattaattcctttggttgt |
1184001 |
T |
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| Q |
105 |
tgattgca |
112 |
Q |
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|||||||| |
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| T |
1184002 |
tgattgca |
1184009 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 1184147 - 1184235
Alignment:
| Q |
226 |
aacaaataacgattgattgttaaaattttactattttcgctgctaatcaagtttatggatatatatgaactctaactttaccaccaaaa |
314 |
Q |
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| T |
1184147 |
aacaaataacaattgattgttaaaattttactattttcgttgctaatcaagtttatggatatatatgaactcttactttaccaccaaaa |
1184235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 1184022 - 1184097
Alignment:
| Q |
152 |
aataagatactatgtaattttttatggaactcaaattgttacatagatgtcctccaatgaaaacaaaattatggaa |
227 |
Q |
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| T |
1184022 |
aataagatactatgtaattttttatggaactcaaattgttacatagatgtcctccaatgaaaacaaaattatggaa |
1184097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 1184266 - 1184309
Alignment:
| Q |
312 |
aaatataagagtagattatatggtgtagtgtttgacttatgact |
355 |
Q |
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| T |
1184266 |
aaatataagagtagattatatggtgtagtgtttgacttatgact |
1184309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 34431469 - 34431382
Alignment:
| Q |
70 |
taaggtactatcgcttaattaattcctttggttgttgattgcaagcttaattaattatatttttgtatagaatagtagcttaaataag |
157 |
Q |
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||||||||||| ||||||||| ||| |||| | ||||||| ||||| | ||||||||||| ||| || || ||||| |||||||||| |
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| T |
34431469 |
taaggtactatagcttaattagttcgtttgttagttgatttcaagcatcattaattatatagttgcatggattagtaacttaaataag |
34431382 |
T |
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