View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_26 (Length: 365)
Name: NF16573_low_26
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 742079 - 742413
Alignment:
| Q |
20 |
cttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742079 |
cttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcct |
742178 |
T |
|
| Q |
120 |
gcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742179 |
gcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgtt |
742278 |
T |
|
| Q |
220 |
cgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742279 |
cgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttct |
742378 |
T |
|
| Q |
320 |
tcgaaaagtagcacaatgtttggccttcatctcac |
354 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |
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|
| T |
742379 |
tcgaaaagtagcacaatgtttggccttcttctcac |
742413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 42449209 - 42449543
Alignment:
| Q |
20 |
cttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcct |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||| ||| | ||||||| |
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|
| T |
42449209 |
cttgcaaccttcctcaattgctggtaagaaagaggattgaatactacaactttggtcagctgattcaacaattctagcaggaaatgctcactgacttcct |
42449308 |
T |
|
| Q |
120 |
gcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgtt |
219 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||| |||| |
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|
| T |
42449309 |
gcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggttcgaggtcatgataatgaccatgtt |
42449408 |
T |
|
| Q |
220 |
cgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
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|
| T |
42449409 |
cgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattactgaagtatgtgctttctccacttct |
42449508 |
T |
|
| Q |
320 |
tcgaaaagtagcacaatgtttggccttcatctcac |
354 |
Q |
| |
|
|| |||||||||||| |||||||||||| |||||| |
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|
| T |
42449509 |
tccaaaagtagcacactgtttggccttcttctcac |
42449543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 739986 - 740318
Alignment:
| Q |
20 |
cttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcct |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||| ||||||| | ||| | |||||||||| || |||||||| | ||||||| |
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|
| T |
739986 |
cttgcaaccttcctcaattgcttgtgagaaagagggtcgaatacaacaacttcgtccagccgattcaacaattctggcctgaaatgatttctcacttcct |
740085 |
T |
|
| Q |
120 |
gcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgt- |
218 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| ||| |||| |
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|
| T |
740086 |
gcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatgactgtgtt |
740185 |
T |
|
| Q |
219 |
----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctcca |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || |||| | |||||| |||||||||||||||| |
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| T |
740186 |
cctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgctttctcca |
740285 |
T |
|
| Q |
315 |
cttcttcgaaaagtagcacaatgtttggccttc |
347 |
Q |
| |
|
||| || ||||||| |||| ||| |||||||| |
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|
| T |
740286 |
cttgctctaaaagtatcacactgtgtggccttc |
740318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 10046892 - 10046583
Alignment:
| Q |
20 |
cttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatgatcagttacttcct |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||| |||||| ||||||| | |||| |||||||||| || |||||| | |||||||| |
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|
| T |
10046892 |
cttgcaaccttcctcaattgctcgtgagatagtggatcgaatacaacaacttcgtctagcctattcaacaattctggccggaaatgcttttttacttcca |
10046793 |
T |
|
| Q |
120 |
gcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgtt |
219 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| ||| ||||| |
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|
| T |
10046792 |
gcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataatgactgtgtt |
10046693 |
T |
|
| Q |
220 |
cgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttct |
319 |
Q |
| |
|
| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||||||||| ||||| |
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|
| T |
10046692 |
cctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttctctacttca |
10046593 |
T |
|
| Q |
320 |
tcgaaaagta |
329 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10046592 |
tcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 38708406 - 38708308
Alignment:
| Q |
111 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataa |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||||||| ||||||||||||| |
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|
| T |
38708406 |
ttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 264
Target Start/End: Complemental strand, 45468462 - 45468309
Alignment:
| Q |
111 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
210 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| | |
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|
| T |
45468462 |
ttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgat |
45468363 |
T |
|
| Q |
211 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
264 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
45468362 |
cacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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