View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_27 (Length: 360)
Name: NF16573_low_27
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26869464 - 26869575
Alignment:
| Q |
1 |
agtcaaaattatttaaggttttgattcttcgtctttcagaaggaataactcataaacataataaatattataa-ttttattcatgacatatccataataa |
99 |
Q |
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| T |
26869464 |
agtcaaaattatttaaggttttgattcttcatctttcagaagcaataactcatatacataataaatattataatttttattcatgacatatccataataa |
26869563 |
T |
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| Q |
100 |
tccatcaattgc |
111 |
Q |
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| T |
26869564 |
tccatcaattgc |
26869575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 26875408 - 26875496
Alignment:
| Q |
192 |
agtagcaaaacagtgaatgatcgtgagaataaaggttgggaaaaaaccagccatattgtctgctataaggaggaatcaatagacgagct |
280 |
Q |
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| T |
26875408 |
agtagcaaaacagtgaatgatcgtgagaataaaggttggaaaaaaaccaaccatattgtctgctataaggaggaatcaatagacgagct |
26875496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 26875793 - 26875897
Alignment:
| Q |
5 |
aaaattatttaaggttttgattcttcgtctttcagaaggaataactcataaacataataaatattataattttattcatgacatatccataataatccat |
104 |
Q |
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| T |
26875793 |
aaaattatttaaggttttggatctttgtctttcataagcagtaactcataaacgtaaaaaatattatagtttttttcatgacatatccacaataatccat |
26875892 |
T |
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| Q |
105 |
caatt |
109 |
Q |
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|||| |
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| T |
26875893 |
aaatt |
26875897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 26599345 - 26599259
Alignment:
| Q |
14 |
taaggttttgattcttcgtctttcagaaggaataactcataaacataataaatattataattttattcatgacatatccataataat |
100 |
Q |
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|||||| |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
26599345 |
taaggtgttgattctatgtctttcagaagcaataactaataagcataataaatattataattgttttcatgacatatccacaataat |
26599259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20230284 - 20230353
Alignment:
| Q |
1 |
agtcaaaattatttaaggttttgattcttcgtctttcagaaggaataactcataaacataataaatattata |
72 |
Q |
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|||||||||||||||||||||||||| | |||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
20230284 |
agtcaaaattatttaaggttttgatttt--gtctttcagaagcaatagctcataagcataataaatattata |
20230353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44909956 - 44910066
Alignment:
| Q |
1 |
agtcaaaattatttaaggttttgattcttcgtctttcagaaggaataactcataaacataataaatattataattttattcatgacatatccataataat |
100 |
Q |
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|||||||||||||||| |||||||| || ||||||| ||| |||||||||||||||||||||| ||||||| ||| |||||||||||| |||||| | |
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| T |
44909956 |
agtcaaaattatttaaaattttgattatttgtctttcgcaagcaataactcataaacataataaaaattataacttttttcatgacatatacataatgct |
44910055 |
T |
|
| Q |
101 |
ccatcaattgc |
111 |
Q |
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|||||| |||| |
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|
| T |
44910056 |
ccatcacttgc |
44910066 |
T |
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