View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_29 (Length: 353)
Name: NF16573_low_29
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_29 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 13653417 - 13653087
Alignment:
| Q |
8 |
actgaaatgaaacattaaaaatcaaggtaccaaccattattcttattgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatggtta |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13653417 |
actgaaatggaacattaaaaatcaaggtaccaaccattattcttattgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatgatta |
13653318 |
T |
|
| Q |
108 |
ggttgatttcccgaaaccattcctccgtacccatattgttgcacaaccagcactgatgaacccgaactaaaattgtttgatgccaacatatcccctataa |
207 |
Q |
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| T |
13653317 |
ggttgatttcccgaaactattcctccgtacccatattgttgcacaactaacactgatgaacccgaactaaaattgtttgatgccaacatatccccgataa |
13653218 |
T |
|
| Q |
208 |
ctccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttctatgatgcccttgtccaactatgtataaatcacaaccaaattt |
307 |
Q |
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| T |
13653217 |
ctccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactatgtataaatcacaaccaaattt |
13653118 |
T |
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| Q |
308 |
gtctaaattatcaaggattgtgggaatatct |
338 |
Q |
| |
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|||||||| |||||||||||||||||||||| |
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| T |
13653117 |
gtctaaatcatcaaggattgtgggaatatct |
13653087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 39 - 338
Target Start/End: Complemental strand, 13660887 - 13660587
Alignment:
| Q |
39 |
aaccattattctt-attgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatggttaggttgatttcccgaaaccattcctccgtac |
137 |
Q |
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| T |
13660887 |
aaccattattctacattgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatggttaggttgatttcccgaaaccattcctccgtac |
13660788 |
T |
|
| Q |
138 |
ccatattgttgcacaaccagcactgatgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattcca |
237 |
Q |
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||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13660787 |
ccatattgttgcacaacgagcacagacgaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattcca |
13660688 |
T |
|
| Q |
238 |
ataaattcgaaaagactcgaacatttctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatc |
337 |
Q |
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| T |
13660687 |
ataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatc |
13660588 |
T |
|
| Q |
338 |
t |
338 |
Q |
| |
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| |
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|
| T |
13660587 |
t |
13660587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 36 - 312
Target Start/End: Complemental strand, 28609517 - 28609242
Alignment:
| Q |
36 |
accaaccattattcttattgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatggttaggttgatttcccgaaaccattcctccgt |
135 |
Q |
| |
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||||||||||||||||||||| ||| || |||| |||||||| |||| ||||| | ||| ||||| ||||| |||||| ||||||||||||| | |
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| T |
28609517 |
accaaccattattcttattgtttcttcactacaaca-cctcaaaagcatcattattgtcgttcacctggtttggttgctttcccaaaaccattcctccat |
28609419 |
T |
|
| Q |
136 |
acccatattgttgcacaaccagcactgatgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattc |
235 |
Q |
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||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| || |||||||||| ||| |||||||||||||| ||||||||||| |
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| T |
28609418 |
acccatattgttgcacaactagcactgatgagcccgaaccaaaattgtttgatgctaaaatatcccctaaaaccccaagttctggacagtcacaccattc |
28609319 |
T |
|
| Q |
236 |
caataaattcgaaaagactcgaacatttctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtcta |
312 |
Q |
| |
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|||||| || ||||||||||| || ||| ||| || |||||||||||||||||||| ||||||| ||| |||| |
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| T |
28609318 |
caataagtttaaaaagactcgagtgttcctacgatttccctgtccaactatgtataaatcgcaaccaattttttcta |
28609242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 437424 - 437644
Alignment:
| Q |
74 |
ctcaaaaccatctttattagtggacacatggttaggttgatttcccgaaaccattcctccgtacccatattgttgcacaaccagcactgatgaacccgaa |
173 |
Q |
| |
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|||||||||||| ||||| |||| ||||||||| ||||| ||| || |||||||||| || |||||||||||||||||||| ||||| ||||| | |||| |
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| T |
437424 |
ctcaaaaccatcgttattggtggtcacatggttgggttgcttttccaaaaccattcccccatacccatattgttgcacaactagcacagatgatctcgaa |
437523 |
T |
|
| Q |
174 |
ctaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttctatgatgcc |
273 |
Q |
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| T |
437524 |
acaaaattatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattcc |
437623 |
T |
|
| Q |
274 |
cttgtccaactatgtataaat |
294 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
437624 |
cttgtccaactatatataaat |
437644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 17597564 - 17597464
Alignment:
| Q |
138 |
ccatattgttgcacaaccagcactgatgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattcca |
237 |
Q |
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||||||||||||||||| || | ||||||| |||| |||| | |||||||| ||||| || || ||||| |||||||| ||||||||| |||||||| |
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| T |
17597564 |
ccatattgttgcacaacaagtattgatgaatttgaaccaaaactatttgatgctaacatgtcaccaataacaccaagttcaggacaatcagcccattcca |
17597465 |
T |
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| Q |
238 |
a |
238 |
Q |
| |
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| |
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|
| T |
17597464 |
a |
17597464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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