View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_3 (Length: 572)
Name: NF16573_low_3
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 16951718 - 16951363
Alignment:
| Q |
20 |
aaggaatcctcaatgcctcatccaacaacaaatgttactaggacttggttaggatattacacgctttcctgaaaggatccggagcgagagaaagctgcag |
119 |
Q |
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| T |
16951718 |
aaggaatcctcaatgcctcatccaacaacaaatgttactaggacttggttaggatattacacgctttcctgaaaggatccggagcgagagaaagctgcag |
16951619 |
T |
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| Q |
120 |
ggtttgctcttagaatttgattatcgtctaaatcacgagaacttgcatttgacttaggttcaaatgatttaaaaacacttcctttcataataggtttgtt |
219 |
Q |
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| T |
16951618 |
ggtttgctcttagaatttgattatcgtctaaatcacgagaacttgcatttgacttaggttcaaatgatttaaaaacacttcctttcataataggtttgtt |
16951519 |
T |
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| Q |
220 |
ctgttcagattttgttctcaaagttgaccatatagaactcttagcagcctcttctggatcattaattctgatggttttcggcacccaaatattcggcttc |
319 |
Q |
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| T |
16951518 |
ctgttcagattttgttctcaaagttgaccatatagaactcttagcagcctcttctggatcattaattctgatagttttcggcacccaaatattcggcttc |
16951419 |
T |
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| Q |
320 |
attatatct---tcttgtgtacttccatctctacaatgttttcctaaagttggtga |
372 |
Q |
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| T |
16951418 |
attatatcttcttcttgtgtacttccatctctacaatgttttcctaaagttggtga |
16951363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 404 - 558
Target Start/End: Complemental strand, 16951364 - 16951210
Alignment:
| Q |
404 |
gaagatgaaggggatggaattccgttgaacgcagatccaactaacgataattcttccatttggccaacccaatttggcatgcagccccaatatgaaggtg |
503 |
Q |
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| T |
16951364 |
gaagatgaaggggatggaattccgttgaacgcagatccaactaacgataattcttccatttggccaacccaatttggcatgcagccccaatatgaaggtg |
16951265 |
T |
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| Q |
504 |
tcatcggtacttctactgtcatcatggttgcaggacttgaagttatgttatcaga |
558 |
Q |
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| T |
16951264 |
tcatcggtacttctactgtcatcatggttgcaggacttgaagttatgttatcaga |
16951210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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