View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_31 (Length: 336)
Name: NF16573_low_31
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 13961214 - 13960906
Alignment:
| Q |
17 |
agttatgagtattatccttaactttacctttgttaaccaaaccactgctctttccagctgaagctggaccttcagctggagctggaccttcagctccagc |
116 |
Q |
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| T |
13961214 |
agttatgagtattatccttaactttacctttgttaactaaaccactgctctttccagctgaagctggaccttcagctggagctggaccttcagctccagc |
13961115 |
T |
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| Q |
117 |
tccagttccagttacagttccctgacctggagtagccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagactccacaatccaa |
216 |
Q |
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| T |
13961114 |
tccagttccagttacagttccctgacctggagtagccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagacttcacaatccaa |
13961015 |
T |
|
| Q |
217 |
gtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagttgaaggtatactcttaacaccaggccatttaactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13961014 |
gtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagttgaagatatactcttaacaccaggccatttaactc |
13960915 |
T |
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| Q |
317 |
tttttgatg |
325 |
Q |
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||||||||| |
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| T |
13960914 |
tttttgatg |
13960906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 13968213 - 13968077
Alignment:
| Q |
182 |
caagtgaataaggaactccagactccacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
281 |
Q |
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| T |
13968213 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13968114 |
T |
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| Q |
282 |
tgaaggtatactcttaacaccaggccatttaactctt |
318 |
Q |
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| T |
13968113 |
tgaagttaaaaccttaacaccatgccatttaactctt |
13968077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 13978299 - 13978163
Alignment:
| Q |
182 |
caagtgaataaggaactccagactccacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
281 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||| || ||| | |||||||| || | |
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| T |
13978299 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13978200 |
T |
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| Q |
282 |
tgaaggtatactcttaacaccaggccatttaactctt |
318 |
Q |
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| T |
13978199 |
tgaagttaaaaccttaacaccatgccatttaactctt |
13978163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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