View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_34 (Length: 315)
Name: NF16573_low_34
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 38074112 - 38074236
Alignment:
| Q |
171 |
tggcaacattgagatccgaattgttcattcatttccatccatcatcatcacatcacagtaaaattcacgaaccaatcaatccaccatccccctctgtcac |
270 |
Q |
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| T |
38074112 |
tggcaacattgagatccgaattgttcattcatttccatccatcatcatcacatcacagtaaaattcacgaaccaatcaatccaccatcccccactgtcac |
38074211 |
T |
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| Q |
271 |
caaattgtctcactcataaaggcaa |
295 |
Q |
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| T |
38074212 |
caaattgtctcactcataaaggcaa |
38074236 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 38073946 - 38074032
Alignment:
| Q |
1 |
aatcaaacgagaaaagagtatcaaatcttaaacgtgaaatcttaaaaaagcagcatatgactatagtcatagagtacacagtagaatcaat |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
38073946 |
aatcaaacgagaaaagagtatcaaatcttaaacgtgaaatcttaaaaaagcagcatatgactgtag----agagtacacagtagaatcaat |
38074032 |
T |
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