View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_35 (Length: 289)
Name: NF16573_low_35
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 36514703 - 36514974
Alignment:
| Q |
9 |
actaacacatctttgtctttgttcttccaatgttggaaaagcactggtctgattctaccattcatttgtcctgcaaagaaagccaaaattgttctgttcc |
108 |
Q |
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| T |
36514703 |
actaacacatctttgtctttgttcttccaatgttggaaaagcactggtctgattctaccattcatttgtcctgcaaagaaagccaaaattgttctgttcc |
36514802 |
T |
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| Q |
109 |
atgttggatagccaccaagtaaacctgttgtttctcctgataccaaattgatttcaggaaatgatgcatctttctttggattgaaatgctctgagatatt |
208 |
Q |
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| T |
36514803 |
atgttggatagccaccaagtaaacctgttgtttctcctgataccaaattgatttcaggaaatgatgcatctttctttggattgaaatgctctgagatatt |
36514902 |
T |
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| Q |
209 |
tgcattgcaaagtactcgaattgcaatgaaatacaattccttcacttaccatgttgcccttggtccctatgc |
280 |
Q |
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| T |
36514903 |
tgcattgcaaagtactcgaattgcaatgaaatacaattccttcacgtaccatgttgcccttggtccctatgc |
36514974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 36806524 - 36806255
Alignment:
| Q |
9 |
actaacacatctttgtctttgttcttccaatgttggaaaagcactggtctgattctaccattcatttgtcctgcaaagaaagccaaaattgttctgttcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
36806524 |
actaacacatctttgtctttgttcttccaatgttggaaaagcacgggtctaattttaccatgcatttttcctgcaaagaaagccaaaattgttctgttcc |
36806425 |
T |
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| Q |
109 |
atgttggatagccaccaagtaaacctgttgtttctcctgataccaaattgatttcaggaaatgatgcatctttctttggattgaaatgctctgagatatt |
208 |
Q |
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| T |
36806424 |
atgttggatagccaccaagtaaacctgctgtttctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatt |
36806325 |
T |
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| Q |
209 |
tgcattgcaaagtactcgaattgcaatgaaatacaattccttcacttaccatgttgcccttggtccctat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36806324 |
tgcattgcaaagtactcgaattgcaatgaaatacaattccttcacataccatgttgcccttggtccctat |
36806255 |
T |
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