View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_37 (Length: 286)
Name: NF16573_low_37
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 30401886 - 30402157
Alignment:
| Q |
16 |
catgtatcttgtctggtcaacatagaagtgctcgttgtatgtgtcgattcagaaaccatgacactaattcaaatgatgacactggtactagagctagcat |
115 |
Q |
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| T |
30401886 |
catgtatcttgtctggtcaacatagaagtgctcgttgtatgtgtcgattcagaaaccgtgacactaattcaaatgatgacactggtactagagctagcat |
30401985 |
T |
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| Q |
116 |
atcaagagttgttgtacttgcagaagccttatttgaggtagctttattaatgcttaa-tttttgatcaacattaataatattatttatacaatttgaatc |
214 |
Q |
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| T |
30401986 |
atcaagagttgttgtacttgcagaagccttatttgaggtagctttattaatgcttaagatttcgatcaacattaataatattatttatacaatttgaatc |
30402085 |
T |
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| Q |
215 |
ttttctacatattttaattaggttctggatgaaattcaccagcaatccgtggttttatcttcccatccttct |
286 |
Q |
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| T |
30402086 |
ttttgtacatattttaattaggttctggatgaaattcaccagcaatccgtagttttatcttcccatccttct |
30402157 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 10784483 - 10784436
Alignment:
| Q |
231 |
attaggttctggatgaaattcaccagcaatccgtggttttatcttccc |
278 |
Q |
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| T |
10784483 |
attaggttctggatgaaattcatcagcaatcagtggttttatcttccc |
10784436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 10784612 - 10784560
Alignment:
| Q |
103 |
ctagagctagcatatcaagagttgttgtacttgcagaagccttatttgaggta |
155 |
Q |
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| T |
10784612 |
ctagagctagcatatcaagaattgttatgctagctgaagccttatttgaggta |
10784560 |
T |
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