View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_41 (Length: 275)
Name: NF16573_low_41
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 5602085 - 5601842
Alignment:
| Q |
22 |
tctcctcgtgcttaagtcttaacaatgtatatccacaaatgagtacataacagttagatacgtatattgaggaaaatgtattgcagttatggcctactaa |
121 |
Q |
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| T |
5602085 |
tctcctcgtgcttaagtcttaacaatgtatatccacaaatgagtacataacagttagatacgtatattgaggaaaatgtattgcagttatggcctactaa |
5601986 |
T |
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| Q |
122 |
tcaannnnnnngtcacgctccaactctaaagtctatataggtaggcacatggacatggtacacatacattcaatatattccatcaaactgcactcacaag |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601985 |
tcaatttttt-gtcacgctccaactctaaagtctatataggtaggcacatggacatggtacacatacattcaatatattccatcaaactgcactcacaag |
5601887 |
T |
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| Q |
222 |
tcaccacccatcttccccttgtgatcccatgagtggcccctttgc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601886 |
tcaccacccatcttccccttgtgatcccatgagtggcccctttgc |
5601842 |
T |
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