View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_47 (Length: 250)
Name: NF16573_low_47
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 1958597 - 1958830
Alignment:
| Q |
14 |
agaagtgcaatccatgttgaatttgtagttttgatctaattgatcagtttgacccatttttattaataatattattcctatatcttgcattcattatgat |
113 |
Q |
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| T |
1958597 |
agaagtgcaatccatgttgaatttgtagttttgatccaattgatcagtttgacccatttttattaataatattattcctatatcttgcattcattatgat |
1958696 |
T |
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| Q |
114 |
aaaaataatacgaaaaaggacaagaacaacttggtactttgacttg-nnnnnnnnnnnnngagcctgagtctctacactacatattaggcttgccaagga |
212 |
Q |
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| T |
1958697 |
aaaaataatacgaaaaaggacaaggacagcttggtactttgacttgttttttccttttttgagcctgagtctctacactacatattaggcttgctaagga |
1958796 |
T |
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| Q |
213 |
agttaacacaaaataatgaaaaaacaaagagtct |
246 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
1958797 |
agttaacacaaaagaatgaaaaaacaaagagtct |
1958830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 2024859 - 2024722
Alignment:
| Q |
109 |
atgataaaaataatacgaaaaaggacaagaacaacttggtactttgacttgnnnnnnnnnnnnngagcctgagtctctacactacatattaggcttgcca |
208 |
Q |
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||||||||||||||||||||||||||||| ||| || || |||||||||| ||||| ||||||||||||||| || |||||||| |
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| T |
2024859 |
atgataaaaataatacgaaaaaggacaaggacagtttagtgctttgacttg-ttttccatttttgagcccgagtctctacactac---ttttgcttgcca |
2024764 |
T |
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| Q |
209 |
aggaagttaacacaaaataatgaaaaaacaaagagtctaatt |
250 |
Q |
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| T |
2024763 |
aggaagttaacacaaaataatgaaaaaacaaggagtctaatt |
2024722 |
T |
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