View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_49 (Length: 240)
Name: NF16573_low_49
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1958864 - 1959087
Alignment:
| Q |
1 |
cttaaatgtaaaaaagctgcaacaagaaaaagctatcaacaatagcagaaagataatgtttacaaataaaaggcaatagaaagtgacataacataacctt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
1958864 |
cttaaatgtaaaaaagctgcaacaaggaaaagctatcaacaatagcagaaagataatgtgtacacataaaaggcaatagaaagtgacataacataacctt |
1958963 |
T |
|
| Q |
101 |
aaatttgtactagtataataaatatgagaaaagtatcaacatatattttaaatttatcttcacacacatacacacattctttctcacattttctttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1958964 |
aaatttgtactagtataataaatatgagaaaagtatcaacatatattttaaatttatcttcacacacatacacacattctttctcacattttctttgtgt |
1959063 |
T |
|
| Q |
201 |
atttattttgtcatggcttgtgtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
1959064 |
atttattttgtcatggcttgtgtt |
1959087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2024692 - 2024574
Alignment:
| Q |
1 |
cttaaatgtaaaaaagctgcaacaagaaaaagctatcaacaatagcagaaagataatgtttaca----aataaaaggcaatagaaagtgacataacataa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||| |
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| T |
2024692 |
cttaaatgtaaaaaagctgcaacaagaaaaagctatcaacaatagcagaaagataatgtgtacaaattaatagaaggcaatagaaagtgacatacagtaa |
2024593 |
T |
|
| Q |
97 |
ccttaaatttgtactagta |
115 |
Q |
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||||||||||||||||||| |
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|
| T |
2024592 |
ccttaaatttgtactagta |
2024574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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