View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_low_5 (Length: 524)

Name: NF16573_low_5
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_low_5
NF16573_low_5
[»] chr8 (18 HSPs)
chr8 (86-524)||(25489109-25489547)
chr8 (86-248)||(25646202-25646369)
chr8 (350-524)||(25385238-25385413)
chr8 (121-248)||(24913783-24913915)
chr8 (86-213)||(25603826-25603951)
chr8 (319-524)||(25603183-25603397)
chr8 (86-185)||(25799544-25799640)
chr8 (86-148)||(25694637-25694699)
chr8 (406-466)||(25321366-25321426)
chr8 (86-159)||(25321934-25322004)
chr8 (449-516)||(25799480-25799547)
chr8 (1-43)||(25489590-25489632)
chr8 (146-235)||(25569119-25569208)
chr8 (1-43)||(25694742-25694784)
chr8 (1-43)||(24913664-24913706)
chr8 (1-43)||(25646412-25646454)
chr8 (171-219)||(25321889-25321937)
chr8 (247-275)||(25385414-25385442)
[»] scaffold0070 (4 HSPs)
scaffold0070 (121-248)||(17826-17951)
scaffold0070 (406-488)||(18458-18539)
scaffold0070 (1-43)||(17707-17749)
scaffold0070 (247-275)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (200-245)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (200-245)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 86 - 524
Target Start/End: Complemental strand, 25489547 - 25489109
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  186 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  286 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctctt 385  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttttgtctctt 25489248  T
Q  386 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489247 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttt 25489148  T
Q  486 tcagttttggctgagaatttatcttaaaatctgtttgat 524  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25489147 tcagttttggctgagaatttatcttaaaatctgtttgat 25489109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  186 attgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 248  Q
     ||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 350 - 524
Target Start/End: Complemental strand, 25385413 - 25385238
Alignment:
Q  350 atatatcatgaatagttgttgctgcttttgtctcttgaca--tcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcac 447  Q
    |||||||||| || ||||||||||| |||||||| ||| |  | ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25385413 atatatcatgcattgttgttgctgcctttgtctc-tgaaattttttttacaaaaattcacaaagaaaaactaaatttcaaatgcatggtggtccattcac 25385315  T
Q  448 ctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatctgtttgat 524  Q
    ||||||| |||||| |||| | ||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  25385314 ctttggatgattctggtttttgcataattactgattttacagttttggctaagaatttatcttaaaatctgtttgat 25385238  T

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Target: chr8; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  121 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  221 gt-----gtctacttactaggttgctacataat 248  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 184  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  185 gattgaatatttctgtcttttatgtcata 213  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 524
Target Start/End: Complemental strand, 25603397 - 25603183
Alignment:
Q  319 caattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaa--- 415  Q
    ||||| |||| ||||||||||||||  |||||||||||||| || |||||| | || ||||||||  |||||| ||||||||||||| | ||||||        
T  25603397 caatttcttctagtaattaaactctaagatgatatatcatgcattgttgttccggcctttgtctcc-gacatcgtttacaaaaattcgctaataaatgtc 25603299  T
Q  416 -------agtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatc 508  Q
           | |||||||  ||||||| |||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||| |||||||| |||    
T  25603298 caaattcactaaatttgtaatgcatattggtccattcaccattggactattctagtttctgcataattgcaggtttttcagttttggttgagaattcatc 25603199  T
Q  509 ttaaaatctgtttgat 524  Q
    |||||||  |||||||    
T  25603198 ttaaaattggtttgat 25603183  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 185  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 25321426 - 25321366
Alignment:
Q  406 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagttt 466  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321426 acaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctagttt 25321366  T

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Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  86 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 159  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 516
Target Start/End: Complemental strand, 25799547 - 25799480
Alignment:
Q  449 tttggacgattctagtttctacataattgctggtttttcagttttggctgagaatttatcttaaaatc 516  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  25799547 tttggatgattctagtttctgcataattgctgatttttcagtttttgctgagaatgtatcttaaaatc 25799480  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25489632 - 25489590
Alignment:
Q  1 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25489632 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 25569208 - 25569119
Alignment:
Q  146 gaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 235  Q
    ||||||||||||||||||||||||  ||||||| |||||  ||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569208 gaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25694784 - 25694742
Alignment:
Q  1 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 43  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  25694784 gtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24913664 - 24913706
Alignment:
Q  1 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 43  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  24913664 gtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25646454 - 25646412
Alignment:
Q  1 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 43  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  25646454 gtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 25321937 - 25321889
Alignment:
Q  171 tctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 219  Q
    ||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  25321937 tctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  247 atcttgtgtcaaaagtacaaaaatatatt 275  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  121 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 220  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  221 gtgtctacttactaggttgctacataat 248  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 406 - 488
Target Start/End: Original strand, 18458 - 18539
Alignment:
Q  406 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttca 488  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  18458 acaaagaaaaactaaatttcaaatgcatgttggtccattcacctttggatgattttagttt-tgcataattgctgatttttca 18539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17707 - 17749
Alignment:
Q  1 gtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 43  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  17707 gtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  247 atcttgtgtcaaaagtacaaaaatatatt 275  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  200 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 245  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  200 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 245  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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