View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_51 (Length: 239)
Name: NF16573_low_51
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 21705794 - 21706003
Alignment:
| Q |
20 |
agagaggatatagttccagatcaaatgaattctcattttctcatgcctagtctaaggacagttacaatttttgattgtccgttgttaaagtcgatattcc |
119 |
Q |
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| T |
21705794 |
agagaggatatagttccagatcaaatgaattctcattttctcatgcctagtctaaggagagttatgattagtgattgtccgttgttaaagtcgatattcc |
21705893 |
T |
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| Q |
120 |
caatcagttatgtggaaggactttcacggctgcaatcgatatatataagaaaagttcctgagctgaaatatatatttggtgaatgtgatcatgaacatca |
219 |
Q |
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| T |
21705894 |
cattctgttatgtggaaggactttcacggctacaatcgatatatataataggcgttcctgagctgaaatatatatttggtgaatgtgatcatgaacatca |
21705993 |
T |
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| Q |
220 |
ttcttctcac |
229 |
Q |
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|||||||||| |
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| T |
21705994 |
ttcttctcac |
21706003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 21713706 - 21713528
Alignment:
| Q |
51 |
ctcattttctcatgcctagtctaaggacagttacaatttttgattgtccgttgttaaagtcgatattcccaatcagttatgtggaaggactttcacggct |
150 |
Q |
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|||||||||||||| ||||||||||| |||||| ||| | ||||||||| ||||| ||||||||||||| ||| | ||||| ||||||||| || ||| |
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| T |
21713706 |
ctcattttctcatgtctagtctaagggaagttacgattctggattgtccgatgttagagtcgatattccccatctgctatgtcgaaggacttgcagagct |
21713607 |
T |
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| Q |
151 |
gcaatcgatatatataagaaaagttcctgagctgaaatatatatttggtgaatgtgatcatgaacatcattcttctcac |
229 |
Q |
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| T |
21713606 |
gaaacggatacatatagcaaaaggtcatgagctgaaatatatatttggtgaatgtgatcatgaacatcattcatctcac |
21713528 |
T |
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