View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_53 (Length: 236)
Name: NF16573_low_53
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29904030 - 29903831
Alignment:
| Q |
17 |
cataggaataatagctactcgtgactcgaataaactcctattaacataatctttggacttttgaatgctggttcataagcaaattaagacggtagatttt |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
29904030 |
cataagaataatagctactcgtgactcgaataaactcatattaacataatctttggacttttgaatgctggtttataaacaaattaagacggtagatttt |
29903931 |
T |
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| Q |
117 |
aaatttgaagtccgttctttgaaaagaacacaatctgttttccatgcctctcaattaaagagagcagtagggcaccaaatagtgacaacaaagttgccag |
216 |
Q |
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|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29903930 |
aaatttgaagcccgttcttcgaaaagaaaacaatctgttttccatgcctctcaattaaagagagcagtagggcaccaaatagtgacaacaaagttgccag |
29903831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 29896447 - 29896327
Alignment:
| Q |
22 |
gaataatagctactcgtgactcgaataaactcctattaacataatctttggacttttgaatgct-ggttcataagcaaattaagacggtagattttaaat |
120 |
Q |
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|||||||||| |||||||||| |||||||||| || ||| ||||||||||||||||||| | | ||||| ||| | |||| | |||||| |||||||| |
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| T |
29896447 |
gaataatagcaactcgtgacttgaataaactcataataaactaatctttggacttttgaacgttgggttcttaaaccaattggggcggtagcttttaaat |
29896348 |
T |
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| Q |
121 |
ttgaagtccgttctttgaaaa |
141 |
Q |
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| T |
29896347 |
tcgaagcccattctttgaaaa |
29896327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 29902034 - 29901959
Alignment:
| Q |
134 |
tttgaaaagaacacaatctgttttccatgcctctcaattaaagagagcagtagggcaccaaatagtgacaacaaagtt |
211 |
Q |
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|||||||||| ||| |||| |||||||| |||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
29902034 |
tttgaaaagagtacactctgctttccatg--tctcaattaaggagagcagtagggcaccaaaccgtgacaacagagtt |
29901959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 29887692 - 29887591
Alignment:
| Q |
108 |
gtagattttaaatttgaagtccgttctttgaaaagaacacaatctgttttccatgcctctcaattaaagagagcagtagggcaccaaatagtgacaacaa |
207 |
Q |
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|||| ||| |||||| || |||||| | |||||||| ||| ||| |||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
29887692 |
gtagctttaaaatttaaactccgttgtctgaaaagattacacgctgctttccatg--tctcaattaaggagagcagtagggcaccaaaccgtgacaacag |
29887595 |
T |
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| Q |
208 |
agtt |
211 |
Q |
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|||| |
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| T |
29887594 |
agtt |
29887591 |
T |
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