View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_54 (Length: 231)
Name: NF16573_low_54
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 39539908 - 39540105
Alignment:
| Q |
19 |
agatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttca |
118 |
Q |
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| T |
39539908 |
agatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttca |
39540007 |
T |
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| Q |
119 |
gtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttcttct |
216 |
Q |
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| T |
39540008 |
gtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttcttct |
39540105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 32095267 - 32095182
Alignment:
| Q |
19 |
agatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggag |
104 |
Q |
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| T |
32095267 |
agatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaacttcctgaggag |
32095182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 30910358 - 30910539
Alignment:
| Q |
32 |
gactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttct |
131 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| | |||||||| ||| |
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| T |
30910358 |
gactgggtaggatgagcagttaggaccaaatcaacagtttggctcttcaaagcatcaaagacttcaagaggggtcttcttcagttgattcacaagcctct |
30910457 |
T |
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| Q |
132 |
tgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttct |
213 |
Q |
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| T |
30910458 |
tgaaggtctcttcaatgtctgactcagtgatggcagagttctcatcaccaaaatcccccttctttaataacttaatccttct |
30910539 |
T |
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