View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_55 (Length: 231)
Name: NF16573_low_55
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 31720044 - 31719953
Alignment:
| Q |
122 |
atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctagggatatttac |
213 |
Q |
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| T |
31720044 |
atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctatggatatttac |
31719953 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 31720146 - 31720079
Alignment:
| Q |
19 |
tgaatgaacaattttcttatatatattagggttgacaaaaaagatctatatcattatctacacattta |
86 |
Q |
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| T |
31720146 |
tgaatgaacaattttcttatatatatttgggttgacaaaaaagatctatatcattatccacacattta |
31720079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 31719469 - 31719433
Alignment:
| Q |
51 |
tgacaaaaaagatctatatcattatctacacatttaa |
87 |
Q |
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| T |
31719469 |
tgacaaaaaaaatctatatcattatccacacatttaa |
31719433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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