View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_57 (Length: 218)
Name: NF16573_low_57
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_57 |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 15616994 - 15616798
Alignment:
| Q |
1 |
atcaagtatagatatagagtgatccgtactgatacaccaatgtgccctgttgtgcaccatgaagcaaaccttcaaaatacttctcattacatagctaggt |
100 |
Q |
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| T |
15616994 |
atcaagtatagatatagagtgacccgtactgatacaccaatgcgccctgttgtgcactatgaagcaaaccttcaaaatacttctcattacatagctaggt |
15616895 |
T |
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| Q |
101 |
ttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagacaacataatcaagttatctgaaatttcaaa |
197 |
Q |
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| T |
15616894 |
ttacgacctagattcaacgtcaagtaactacgggaaggaaagtaccacgcattgtaaatacgagagataacataatcaagttatctgaaatttcaaa |
15616798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 33306 - 33173
Alignment:
| Q |
70 |
cttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagaca |
169 |
Q |
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| T |
33306 |
cttcaaaatacttatccatacataactaggatcgtgacctaaatttgttgtcaagtaactaagagaaggaaaataccgagccttgtaaatacgagagaca |
33207 |
T |
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| Q |
170 |
acataatcaagtta--tctgaaatttcaaacctt |
201 |
Q |
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| T |
33206 |
agagaatcaggttatgtctgaaatttccaacctt |
33173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 4608938 - 4608770
Alignment:
| Q |
4 |
aagtatagatatagagtgatccgtactgatacaccaatgtgccctgttgtgcaccatgaagcaaac--cttcaaaatacttctcattacatagctaggtt |
101 |
Q |
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| T |
4608938 |
aagtatagatatagagtgactcataccaatacacaaatgtgacccatggtgcactatgaagcgtacgcctttaaaatacttctcgatacataactaggat |
4608839 |
T |
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| Q |
102 |
tgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagacaa |
170 |
Q |
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| T |
4608838 |
tgtgacctaaatttttcgtcaagtagttacagaaaggaaaataccgagccttgtaaatacgagagacaa |
4608770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 17687 - 17801
Alignment:
| Q |
70 |
cttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagaca |
169 |
Q |
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| T |
17687 |
cttcaaaatacttatccatacataactaggatcgtgacctaaatttgttgtcaagtaactacgagaaggaaaataccaagccttgtaaatacgagagaca |
17786 |
T |
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| Q |
170 |
acataatcaagttat |
184 |
Q |
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| T |
17787 |
agagaatcaggttat |
17801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 43219358 - 43219527
Alignment:
| Q |
1 |
atcaagtatagatatagagtgatccgtactgatacaccaatgtgccctgttgtgcaccatgaagcaaaccttcaaaatacttctcattacatagctaggt |
100 |
Q |
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||||||||| |||||||||||| |||||| ||||||||| | |||| | |||| ||||| | ||||||||||||||||| |||||||||| |
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| T |
43219358 |
atcaagtattgatatagagtgacccgtaccaatacaccaacgcgccccaccgcgcactatgaaacgcgccttcaaaatacttctccaggcatagctagga |
43219457 |
T |
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| Q |
101 |
ttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagacaa |
170 |
Q |
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|||||||| | ||| ||||||||||||| | |||||||| || || || |||||||| |||||||||| |
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| T |
43219458 |
ttgtgacccaaattagtcgtcaagtaactatgagaaggaaaatatcgagccttgtaaatgcgagagacaa |
43219527 |
T |
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