View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_58 (Length: 216)
Name: NF16573_low_58
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 47920122 - 47920030
Alignment:
| Q |
40 |
tgagccatggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttttcatcttgacatg |
132 |
Q |
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| T |
47920122 |
tgagccatggcactgcagagtagcttctccatacatgatgaaaaatatgatgatgatggtctcataaaacgaacaggttttcatcttgacatg |
47920030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 47911279 - 47911205
Alignment:
| Q |
45 |
catggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt |
119 |
Q |
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| T |
47911279 |
catggcagtgcagagtagcttatccattgatagtgtaaaatatgatgatgatggtcacataaaacgaacaggttt |
47911205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 47925337 - 47925288
Alignment:
| Q |
48 |
ggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatg |
97 |
Q |
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| T |
47925337 |
ggcactgcagagtagcttctccatggatgatggaagatacgatgatgatg |
47925288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 47904211 - 47904146
Alignment:
| Q |
54 |
gcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt |
119 |
Q |
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| T |
47904211 |
gcagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcatgaaacgaacaggttt |
47904146 |
T |
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