View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_6 (Length: 516)
Name: NF16573_low_6
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 14279403 - 14279895
Alignment:
| Q |
16 |
aaaatatcatttctcattcaaagaataggctagtttactagagcagaaattgaatgaaactcacacgactcaaaattctgccagaaggagtagtatcaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14279403 |
aaaatatcatttctcattcaaagaataggctagtttactagagcagaaattgaatgaaactcacacgactcaaaattctgccagaaggagtagtatcaaa |
14279502 |
T |
|
| Q |
116 |
gaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaataagtaaacaagagagctctcaacata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14279503 |
gaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaataagtaaacaagagagctctcaacata |
14279602 |
T |
|
| Q |
216 |
acaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaagaaggaatgccagaatcatctgcagttgcagttgctagccaataat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14279603 |
acaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaagaaggaattccagaatcatctgcagttgcagttgctagccaataat |
14279702 |
T |
|
| Q |
316 |
cgccaaccaaagttgacagcatacaagccactgacattgctaccatgagtgctattccccaccatccaaatgcttctgtgaaataatgtttgtatacttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14279703 |
cgccaaccaaagttgacagcatacaagccactgacattgctaccatgagtgctattccccaccatccaaatgcttctgtgaaataatgtttgtatacttt |
14279802 |
T |
|
| Q |
416 |
aaggtttacacgtccagtttctctttcctcatcttcaatgagctttgctgcagttttattagacttagatttatcttgagaagacttcttttc |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14279803 |
aaggtttacacgtccagtttctctttcctcatcttcaatgagctttgctgcagttttattagacttagatttatcttgagaagacttcttttc |
14279895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 70 - 508
Target Start/End: Original strand, 14317631 - 14318069
Alignment:
| Q |
70 |
tgaaactcacacgactcaaaattctgccagaaggagtagtatcaaagaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
14317631 |
tgaaactcacacgactcaaaattctgcctgaaggagtagtatcaaagaatgacattggtgcgtgaaggatactttgaagcaatccaatgaagaagctttg |
14317730 |
T |
|
| Q |
170 |
agatgtctttaaaccccaataagtaaacaagagagctctcaacataacaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
14317731 |
agatgtctttaaaccccaataagtaaacaagagagctctcaccataacaactatgcatgcaacaacagctataacagcatagacagtaatgaaagtgaaa |
14317830 |
T |
|
| Q |
270 |
gaaggaatgccagaatcatctgcagttgcagttgctagccaataatcgccaaccaaagttgacagcatacaagccactgacattgctaccatgagtgcta |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14317831 |
gaaggaatgccagaatcatctgcagtagcaattgctagccaataatcaccagccaaaaatgacagcatccaagccactgacattgctaccatgagtgcta |
14317930 |
T |
|
| Q |
370 |
ttccccaccatccaaatgcttctgtgaaataatgtttgtatactttaaggtttacacgtccagtttctctttcctcatcttcaatgagctttgctgcagt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14317931 |
ttccccaccatccaaatgcttctgtgaaataatgtttgtatactttaaggtttacacgtccagtttctctttcctcgtcttcaatgagctttgctgcagt |
14318030 |
T |
|
| Q |
470 |
tttattagacttagatttatcttgagaagacttcttttc |
508 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||| |||||| |
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|
| T |
14318031 |
tttatcagacttaggtttatctagagaagactgcttttc |
14318069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 14301158 - 14301642
Alignment:
| Q |
16 |
aaaatatcatttctcattcaaagaataggctagtttactagagcagaaattgaatgaaactcacacgactcaaaattctgccagaaggagtagtatcaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14301158 |
aaaatatcatttctcattcaaagaataggctagtttactagagcagaaattgaatgaa-ctcacacgactcaaaattcttccagaaggagtagtatcaaa |
14301256 |
T |
|
| Q |
116 |
gaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaataagtaaacaagagagctctcaacata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||| |
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|
| T |
14301257 |
gaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgagatgtctttaaaccccaatatgtaaaaaagaaagctcttgccata |
14301356 |
T |
|
| Q |
216 |
acaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaagaaggaatgccagaatcatctgcagttgcagttgctagccaataat |
315 |
Q |
| |
|
|| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||| ||| ||||||||||||||| |
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|
| T |
14301357 |
accactatacatgacacaacagctataacagcatagacagtaatgaaagtgaaagaagaaacggcagaatcatctgcagtagcaattgctagccaataat |
14301456 |
T |
|
| Q |
316 |
cgccaaccaaagttgacagcatacaagccactgacattgctaccatgagtgctattccccaccatccaaatgcttctgtgaaataatgtttgtatacttt |
415 |
Q |
| |
|
| | ||||||| ||||||||| ||| | ||||| | ||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14301457 |
cactaaccaaaaatgacagcatccaaactactgatactgctaccattaatgctactccccaccatccaaatgcttctgtgaaatattgtttgtatacttc |
14301556 |
T |
|
| Q |
416 |
aaggtttacacgtccagtttctctttcctcatcttcaatgagctttgctgcagttttattagacttagatttatcttgagaagact |
501 |
Q |
| |
|
||| || || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||| |
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|
| T |
14301557 |
aagattcacttgtccaatttctctttcctcatcttcaatgagctttgctgcagttttatcagacttggattgaatttgagaagact |
14301642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 72 - 499
Target Start/End: Original strand, 25883050 - 25883477
Alignment:
| Q |
72 |
aaactcacacgactcaaaattctgccagaaggagtagtatcaaagaatgacattggtgcatgaaggatactttgaagcattccaacgaagaagctttgag |
171 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
25883050 |
aaactcacacgactcaaaattctgccggaaggagtagtatcaaagaatgacattggtgcatgaaggatacattgaagcattccaatgaagaagctttgag |
25883149 |
T |
|
| Q |
172 |
atgtctttaaaccccaataagtaaacaagagagctctcaacataacaactatgcatacaacaacagctataacagcatagacagtaatgaaagtggaaga |
271 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | |||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25883150 |
atgtctttaaacccaaatatgtaaacaagaaacctcttaccataacaactatgcatgcaacaacagctattacagcatagacagtaatgaaagtagaaga |
25883249 |
T |
|
| Q |
272 |
aggaatgccagaatcatctgcagttgcagttgctagccaataatcgccaaccaaagttgacagcatacaagccactgacattgctaccatgagtgctatt |
371 |
Q |
| |
|
| |||||| ||||||||||||||||||| ||||||||||||||| ||| ||||| ||| | |||||||| |||||||||| || |||||||||| |
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|
| T |
25883250 |
aagaatgctagaatcatctgcagttgcaaatgctagccaataatcaccagccaaaaatgatgcaacccaagccaccgacattgctagcacgagtgctatt |
25883349 |
T |
|
| Q |
372 |
ccccaccatccaaatgcttctgtgaaataatgtttgtatactttaaggtttacacgtccagtttctctttcctcatcttcaatgagctttgctgcagttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25883350 |
ccccaccatccaaatgcttctgtgaaatattgtttgtatacattaaggttcacttgtccagtttctctttcctcatcttcaatgagctttgctgcagttt |
25883449 |
T |
|
| Q |
472 |
tattagacttagatttatcttgagaaga |
499 |
Q |
| |
|
| | |||||| |||| ||||| |||||| |
|
|
| T |
25883450 |
tttcagacttggattgatcttcagaaga |
25883477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 25882959 - 25882996
Alignment:
| Q |
16 |
aaaatatcatttctcattcaaagaataggctagtttac |
53 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
25882959 |
aaaatatcatttctcattcaaagaatggtctagtttac |
25882996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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