View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_low_60 (Length: 209)

Name: NF16573_low_60
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_low_60
NF16573_low_60
[»] chr4 (3 HSPs)
chr4 (112-196)||(33697081-33697165)
chr4 (10-45)||(33696979-33697014)
chr4 (114-181)||(29051335-29051405)
[»] chr7 (1 HSPs)
chr7 (127-183)||(44917210-44917269)
[»] chr1 (1 HSPs)
chr1 (113-192)||(48341816-48341893)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 33697081 - 33697165
Alignment:
Q  112 tatgattaatgagagaattgttgattacatgaaatacaacaagacttatatagccaaaaagaacaactaactggtataactaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697081 tatgattaatgagagaattgttgattacatgaaatacaacaagacttatatagccaaaaagaacaactaactggtataactaatt 33697165  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 33696979 - 33697014
Alignment:
Q  10 cgaagaatatataaaagaccgataaactaaccctta 45  Q
    |||| |||||||||||||||||||||||||||||||    
T  33696979 cgaaaaatatataaaagaccgataaactaaccctta 33697014  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 29051405 - 29051335
Alignment:
Q  114 tgattaatgagagaattgttgattacatgaa---atacaacaagacttatatagccaaaaagaacaactaa 181  Q
    ||||||||  |||||||||||||||||| ||   ||||| |||||||| ||||||||| | ||||||||||    
T  29051405 tgattaataggagaattgttgattacattaaaggatacatcaagacttttatagccaacatgaacaactaa 29051335  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 44917269 - 44917210
Alignment:
Q  127 aattgttgattacatgaa---atacaacaagacttatatagccaaaaagaacaactaact 183  Q
    ||||||||||||||| ||   || ||||||||||||||||||||  ||||||||||||||    
T  44917269 aattgttgattacataaacagatgcaacaagacttatatagccagtaagaacaactaact 44917210  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 48341816 - 48341893
Alignment:
Q  113 atgattaatgagagaattgttgattacatgaaatacaacaagacttatatagccaaaaagaacaactaactggtataact 192  Q
    ||||||||||||| |||||||||||||  || ||||| |||||||||| ||||| |  ||| ||||||||| || |||||    
T  48341816 atgattaatgagacaattgttgattac--gagatacatcaagacttatgtagccgatcagagcaactaactagtctaact 48341893  T

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