View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_61 (Length: 208)
Name: NF16573_low_61
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 4571949 - 4571785
Alignment:
| Q |
29 |
taaaacacccaaaaaagaatatcaaaataggaccggaatcgctcaaggttaaaaaaccacaactgaaataaccccttcgacttcaaccaaaatacatcaa |
128 |
Q |
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| T |
4571949 |
taaaacacccaaaaaagaatatcaaaacaggaccggaatcgctcaaggttaaaaaaccacaactgaaataaccccttcgacttcaaccaaaatacatcaa |
4571850 |
T |
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| Q |
129 |
cacacattccttttctgactgtttctgattgttgactggcacatttatatctacatctggcatct |
193 |
Q |
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| T |
4571849 |
cacacattccttttctgactgtttctgattgttgactggcacatttatatctacatctggcatct |
4571785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 14703591 - 14703453
Alignment:
| Q |
41 |
aaaagaatatcaaaataggaccggaatcgctcaaggttaaaaaaccacaactgaaataaccccttcgacttcaaccaaaatacatcaacacacattcctt |
140 |
Q |
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| T |
14703591 |
aaaagaatatcaaagcaggaccgtaatcgttgaaggtcaaaaaaccacaactgaactaa----tttgaattcaaccaaactacaccaacacacattcct- |
14703497 |
T |
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| Q |
141 |
ttctgactgtttctgattgttgactggcacatttatatctacatctggcatct |
193 |
Q |
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| T |
14703496 |
---------tttctgattgttgactggcacatttatatctacatctggcatct |
14703453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 10220352 - 10220308
Alignment:
| Q |
89 |
aactgaaataaccccttcgacttcaaccaaaatacatcaacacac |
133 |
Q |
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| T |
10220352 |
aactgaactaaccccttcaacttcaaccaaaatacaccaacacac |
10220308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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