View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_7 (Length: 493)
Name: NF16573_low_7
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_7 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 32918 - 32432
Alignment:
| Q |
1 |
atactcgtagtgttgttcaagtaatctagtgtatggagctcgtacaatttaaatatgaataagtagagtgtctgagatttaaatattgaactctgcgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32918 |
atactcgtagtgttgttcaagtaatctagtgtatggagctcgtacaatttaaatatgaataagtagagtgtctgagattcaaatattgaactctgcgtat |
32819 |
T |
|
| Q |
101 |
atta---------cttatcaattgagttgagctcacggaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaag |
191 |
Q |
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| T |
32818 |
attatgcattgtccttatcaattgagttgagttcacagaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaag |
32719 |
T |
|
| Q |
192 |
acaaagttttagtataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccag |
291 |
Q |
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| T |
32718 |
acaaagttttagtataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccag |
32619 |
T |
|
| Q |
292 |
cagccactagagagacaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618 |
cagccactagagagacaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgt |
32519 |
T |
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| Q |
392 |
ttcaaccttattttcagcttttcttttctctaattccatccaaaagatgtcctccaactttcttctacactgaaattttgagtatac |
478 |
Q |
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| T |
32518 |
ttcaaccttattttcagcttttcttttctctaattccatccaaaagatgtcctccaactttcttctacactgaaattttgagtatac |
32432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 220 - 475
Target Start/End: Complemental strand, 25480 - 25225
Alignment:
| Q |
220 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
319 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
25480 |
ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagagacaatgttgtctac |
25381 |
T |
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| Q |
320 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattttcagcttttcttttc |
419 |
Q |
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| T |
25380 |
aacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgtta |
25281 |
T |
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| Q |
420 |
tctaattccatccaaaagatgtcctccaactttcttctacactgaaattttgagta |
475 |
Q |
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| T |
25280 |
tctaattccatcccgaaaaagtcatcaagctttcttctacactgaaattttaagta |
25225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 220 - 470
Target Start/End: Complemental strand, 40077 - 39824
Alignment:
| Q |
220 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
40077 |
ttagaacaattggatacttagcaagaaggtaaatagcccacatggatgaaagggaagtagacatatatccaccaatcactagagagacaatgttgtctac |
39978 |
T |
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| Q |
320 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttg---tttcaaccttattttcagcttttctt |
416 |
Q |
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| T |
39977 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtacttttcaccttattttcattctttctt |
39878 |
T |
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| Q |
417 |
ttctctaattccatccaaaagatgtcctccaactttcttctacactgaaatttt |
470 |
Q |
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| T |
39877 |
ttacctaactccatccaaaaaatgtcctcaagctttcttctacactaaaatttt |
39824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 215 - 470
Target Start/End: Original strand, 4739 - 4994
Alignment:
| Q |
215 |
ttttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttg |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
4739 |
tttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatagatatccagcagctactagagagacaatgttg |
4838 |
T |
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| Q |
315 |
tctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattttcagcttttc |
414 |
Q |
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|||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | ||||| |
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| T |
4839 |
tctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattttttc |
4938 |
T |
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| Q |
415 |
ttttctctaattccatccaaaagatgtcctccaactttcttctacactgaaatttt |
470 |
Q |
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| T |
4939 |
tgttatctatttcaatccagaaaaagtcatcaagctttcttctacactgaaatttt |
4994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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