View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_9 (Length: 491)
Name: NF16573_low_9
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Original strand, 3294071 - 3294536
Alignment:
| Q |
9 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3294071 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatggcaa |
3294170 |
T |
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| Q |
109 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctaccttctcgaataattcgccaccacgtgcat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3294171 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctaccttctcgaataattcgccgccacgtgcat |
3294270 |
T |
|
| Q |
209 |
attccatgacaaacaagattttagtttttgttgccatgacttctttaaggttgacgatgtttggatgttttactaacctcatgacagaaatttcacgttt |
308 |
Q |
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| T |
3294271 |
attccatgacaaacaggattttggtttttgttgccatgacttctttaaggttaacgatgtttggatgttttactaacctcatgacagaaatttcacgttt |
3294370 |
T |
|
| Q |
309 |
gatttgttccatcatgccttcttttttcactttgtctttgtctaccaccttaattgctacaccttctcctgttgaaatttctttagcatagtacactttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294371 |
gatttgttccatcatgccttcttttttcactttgtctttgtctaccaccttaattgctacaccttctcctgttgaaatttctttagcatagtacactttt |
3294470 |
T |
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| Q |
409 |
gcaaatgttcctttacctagtactcttcccatctcgtacttgccaaataacatgtgtgctttcact |
474 |
Q |
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| T |
3294471 |
gcaaatgttcctttacctagtactcttcccatctcgtacttgccaaataacatgtgtgctttcact |
3294536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 880912 - 881081
Alignment:
| Q |
13 |
gagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaataat |
112 |
Q |
| |
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||||| |||||||||||||| || || | ||||||||||| | | || ||| || ||||| ||||| ||||| | ||||| | |||||| ||| ||| |
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| T |
880912 |
gagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaat |
881011 |
T |
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| Q |
113 |
ctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctacctt |
182 |
Q |
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| T |
881012 |
caacagcactaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgctacctt |
881081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 9995094 - 9995146
Alignment:
| Q |
70 |
ggttttaaatcacgatgagaaacacctctactatgacaataatctacagcact |
122 |
Q |
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||||| |||||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
9995094 |
ggtttcaaatcacgatgacaaacacctctactatgacagtaatcaacagcact |
9995146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 22370052 - 22370112
Alignment:
| Q |
89 |
aaacacctctactatgacaataatctacagcacttataagctgttggaagtactttcttgc |
149 |
Q |
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||||||||||||| ||||| ||||| ||||||| ||||||||| || || || |||||||| |
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| T |
22370052 |
aaacacctctactgtgacagtaatccacagcacatataagctgctgaaaatattttcttgc |
22370112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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