View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_1 (Length: 646)
Name: NF16574_low_1
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 4 - 630
Target Start/End: Original strand, 43186136 - 43186762
Alignment:
| Q |
4 |
taagagaatgtattttgcattgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaactattttaaaa |
103 |
Q |
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| T |
43186136 |
taagagaatgtattttgcattgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaactattttaaaa |
43186235 |
T |
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| Q |
104 |
caaacttaaagtgacagttcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtgtatctcacttc |
203 |
Q |
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| T |
43186236 |
caaacttaaagtgacagttcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtgtatctcacttc |
43186335 |
T |
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| Q |
204 |
ctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatgatctcatgcatgca |
303 |
Q |
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| T |
43186336 |
ctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatgatctcatgcatgca |
43186435 |
T |
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| Q |
304 |
taatgcacaattatttaattacgatagtaactagaaaattaacattctcatattgatgagtttcaaacaaatatcattgaagataaaagttacatgatca |
403 |
Q |
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| T |
43186436 |
taatgcacaattatttaattacgatagtaactagaaaattaacattctcatattgatgagtttcaaacaaatatcattgaagataaaagttacatgatca |
43186535 |
T |
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| Q |
404 |
tagacaatgaacaaattgaaaacttaactagagaacattaggatatgttaatcactatccttggatgaaatgtcagaggttattgggttctttgactctt |
503 |
Q |
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| T |
43186536 |
tagacaatgaacaaattgaaaccttaactagagaacattaggatatgttaatcactatccttggatgaaatgtcagaggttattgggttctttgaccctt |
43186635 |
T |
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| Q |
504 |
tttacatctttctttccatataccagataaagttgaaataacgacggaatttagagacaaaaaattaaaattggtcacgatacttggcgtctgtaacact |
603 |
Q |
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| T |
43186636 |
tttacatctttctttccatataccagataaagttgaaataacgacggaatttagagacaaaaaattaaaattggtcacgatacttggcgtctgtaacact |
43186735 |
T |
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| Q |
604 |
tagtgatgaaaatagagacgaattttg |
630 |
Q |
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| T |
43186736 |
tagtgatgaaaatagagacgaattttg |
43186762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 3901399 - 3901439
Alignment:
| Q |
536 |
ttgaaataacgacggaatttagagacaaaaaattaaaattg |
576 |
Q |
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| T |
3901399 |
ttgaaataacgacggaaattagagacgaaaaaataaaattg |
3901439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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