View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_2 (Length: 502)
Name: NF16574_low_2
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 69 - 487
Target Start/End: Complemental strand, 36027449 - 36027031
Alignment:
| Q |
69 |
gactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgagtagggtaagattgg |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36027449 |
gactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgggtagggtaagattgg |
36027350 |
T |
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| Q |
169 |
acgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaatataacg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027349 |
acgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaatataacg |
36027250 |
T |
|
| Q |
269 |
tacacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027249 |
tacacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatat |
36027150 |
T |
|
| Q |
369 |
ggcttgatatagctggctacataaaccagcatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaa |
468 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027149 |
ggcttgatatagctggctacataaaccagtatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaa |
36027050 |
T |
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| Q |
469 |
agagaaccagtattcaaac |
487 |
Q |
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| T |
36027049 |
agagaaccagtattcaaac |
36027031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 261
Target Start/End: Original strand, 16931801 - 16931987
Alignment:
| Q |
73 |
gttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgagtaggg-taagattggacg |
171 |
Q |
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|||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||| || |||| |||||| | |||||| |||||||||||| |
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| T |
16931801 |
gttttcaaacaatattatatttatcaaactcatcgttgaa-ttagacagggatgatatgataattatgagaaatcatcggggtaggggtaagattggacg |
16931899 |
T |
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| Q |
172 |
cactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16931900 |
cactaatatcgctggtcatgagaggtgcagag--atatctttaaacaactaaaatcatcacaccacattaccagcaatcattgtgaaaaa |
16931987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 16932599 - 16932726
Alignment:
| Q |
279 |
cttaaatatcaactaatattaaagatgta-tgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatatggcttgata |
377 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
16932599 |
cttaaatatcaactaatattaaaaatgtaatgtatgaaattgcgaaaagaaagattccacaagagatccaactcgatatatttgataatattgcttgata |
16932698 |
T |
|
| Q |
378 |
tagctggctacataaaccagcatcaaat |
405 |
Q |
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|||||||| ||||||||||| ||||||| |
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| T |
16932699 |
tagctggccacataaaccagtatcaaat |
16932726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 16932767 - 16932850
Alignment:
| Q |
404 |
atcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaaagagaaccagtattcaaac |
487 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16932767 |
atcatgacacactgctaaaccagcaaagtatgaatcttctgaatgcaacttgattcaggaagaaaagagaaccagtactcaaac |
16932850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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