View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_3 (Length: 402)
Name: NF16574_low_3
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 1367299 - 1366944
Alignment:
| Q |
9 |
tcgaagaatattgaaataaaacctcgaatgcattatttccatttcgtacggtcttcctttgataacaaatca----taatcgaatacatgcagaagatca |
104 |
Q |
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| T |
1367299 |
tcgaaaaatattgaaataaaacctcgaatgcattatttccatttcgtacggtcttcctttgataacaaatcaatcataatcgaatacatgcagaagatca |
1367200 |
T |
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| Q |
105 |
ttgaacatgcacagatatataaaatattatgagttaatttcatcagtatagtcaagaaactagcatgggtgtgactttcttaactagtggatattcaaat |
204 |
Q |
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| T |
1367199 |
ttgaacatgcacagatatataaaattatatgagttaatttcattagtatagtca-gaaactagcatgggtgtgactttcttaactagtggatattcaaat |
1367101 |
T |
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| Q |
205 |
ttcaaagtttcatacacaaccacacaaatatgcagtgataatgcatgcagcgtgttgcattagttgatattcaagaaaagactaattttgtcgatgtctt |
304 |
Q |
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| T |
1367100 |
ttcaaagtttcatacacaaccacacaaatatgcagtgataatgcatgcagcgtgttgcattagttgatattcaagaaaagactaattttgtcaatgtctt |
1367001 |
T |
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| Q |
305 |
gtattattttaaatatttgtgactatttttcttctaaatagagtaaataagttcatt |
361 |
Q |
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| T |
1367000 |
gtattattttaaatatttgtgactatttttcttctaaatagagtaaataagttcatt |
1366944 |
T |
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