View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_4 (Length: 370)
Name: NF16574_low_4
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 42765606 - 42765325
Alignment:
| Q |
1 |
cttgttgtttcgttgtttaccttaaaaataataacacggttgccttgtttcgttgtttgaaaataattgtacctcttgaccaaaaataagtgtacccgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765606 |
cttgttgtttcgttgtttaccttaaaaataataacacggttgccttgtttcgttgtttgaaaataattgtacctcttgaccaaaaataagtgtacccgat |
42765507 |
T |
|
| Q |
101 |
tgtttaccttnnnnnnnnnnnn-tcaatttctgatattaagtagattaaatttatttatttaacataaatgcctaaaaaatgaagaatgaacttaatcac |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765506 |
tgtttaccttaaaaacaaaaaaatcaatttctgatattaagtagattaaatttatttatttaacataaatgcctaaaaaatgaagaatgaacttaatcac |
42765407 |
T |
|
| Q |
200 |
aatagttgactccattacaaacatcattcataagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttct |
281 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765406 |
aatagttgactccattacaaacatcattcatgagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttct |
42765325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 42764911 - 42764801
Alignment:
| Q |
216 |
acaaacatcattcataagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttctttttgttttgctgcatgaacctacccttgcattc |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42764911 |
acaaacatcattcatgagagaagcaatgtcttcatccatttctcatgtgttaatatcacttcttctttttgttttgctgcatgaacctacccttgcaatt |
42764812 |
T |
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| Q |
316 |
aaacaggcaaa |
326 |
Q |
| |
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||||||||||| |
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| T |
42764811 |
aaacaggcaaa |
42764801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 42745748 - 42745639
Alignment:
| Q |
216 |
acaaacatcattcataagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttctttttgttttgctgcatgaacctacccttgcattc |
315 |
Q |
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||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| | |
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| T |
42745748 |
acaaacatcattcatgagagaaacaatgtcttcatccatttctcatgtgttaatgtcacttcttctttttgttttactgcaggaacctacccttgcaatt |
42745649 |
T |
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| Q |
316 |
aaacaggcaa |
325 |
Q |
| |
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|||||||||| |
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| T |
42745648 |
aaacaggcaa |
42745639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 42755109 - 42755000
Alignment:
| Q |
216 |
acaaacatcattcataagagaagcaatgtcttcatccatttgtcatgtgttaatatcacttcttctttttgttttgctgcatgaacctacccttgcattc |
315 |
Q |
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|
||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| | |
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| T |
42755109 |
acaaacatcattcatgagagaaacaatgtcttcatccatttctcatgtgttaatgtcacttcttctttttgttttactgcaggaacctacccttgcaatt |
42755010 |
T |
|
| Q |
316 |
aaacaggcaa |
325 |
Q |
| |
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|||||||||| |
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|
| T |
42755009 |
aaacaggcaa |
42755000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 42755935 - 42755865
Alignment:
| Q |
132 |
gatattaagtagattaaatttatttatttaacataaatgcctaaaaaatgaagaatgaacttaatcacaat |
202 |
Q |
| |
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|||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
42755935 |
gatattaattaaattaaatttattttgttaacataaatgcctaaaagatgaagaatgaacttaaccacaat |
42755865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 42760778 - 42760733
Alignment:
| Q |
325 |
aacttctagtttcagtgaaccctaggagactaaacttcaagaaaaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760778 |
aacttctagtttcagtgaaccctaggagactaaacttcaagaaaaa |
42760733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 42745967 - 42745908
Alignment:
| Q |
133 |
atattaagtagattaaatttatttatttaacataaatgcctaaaaaatgaagaatgaactt |
193 |
Q |
| |
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||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42745967 |
atattaattaaattaaatttatttatttaa-ataaatgcctaaaaaatgaagaatgaactt |
42745908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 42732282 - 42732371
Alignment:
| Q |
239 |
caatgtcttcatccatttgtcatgtgttaatatcacttcttctttttgttttgctgcatgaa---cctacccttgcattcaaacaggcaa |
325 |
Q |
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||||||| |||||||||||||||||||| | || ||||||||||||||||||| |||| ||| |||||||||||| | |||||||||| |
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| T |
42732282 |
caatgtcatcatccatttgtcatgtgttgacattacttcttctttttgttttgatgcaggaacatcctacccttgcaattaaacaggcaa |
42732371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 42741954 - 42741912
Alignment:
| Q |
328 |
ttctagtttcagtgaaccctaggagactaaacttcaagaaaaa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42741954 |
ttctagtttcagtgaaccctaggagactaaatttcaagaaaaa |
42741912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 42745902 - 42745856
Alignment:
| Q |
174 |
aaaaaatgaagaatgaacttaatcacaatagttgactccattacaaa |
220 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
42745902 |
aaaaaatgaagaatgaacttgaccacaatagttgactccattacaaa |
42745856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42765096 - 42765026
Alignment:
| Q |
152 |
tatttatttaacataaatgcctaaa-aaatgaagaatgaacttaatcacaatagttgactccattacaaac |
221 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42765096 |
tatttatttaacataaatgttgaaggaaatgaagaatgaacttaaccacaatagttgactccataacaaac |
42765026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 23036538 - 23036635
Alignment:
| Q |
124 |
caatttctgatattaagtagattaaatttatttatttaacataaatgcctaaaa-aatgaagaatgaacttaatcacaatagttgactccattacaaa |
220 |
Q |
| |
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|||||| | ||||||| || ||||||||||||||||||||||| |||| ||||| |||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
23036538 |
caattttttatattaattaaattaaatttatttatttaacatatatgcttaaaaaaatgaagaatgaacttgaccacaacagttgactccattacaaa |
23036635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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