View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_5 (Length: 337)
Name: NF16574_low_5
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 3416280 - 3416606
Alignment:
| Q |
8 |
taggcctcaccgagtttcaccgataaacactagtaagaagga----------agtccctcaataattaccctcataaagtctcgcagaaaagttatgtgc |
97 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3416280 |
taggtctcaccgagtttcaccgataaacacttgtaagaaggagcaagaaggaagtccctcaataattgccctcataaagtctcgcagaaaagttatgtgc |
3416379 |
T |
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| Q |
98 |
attgtgcctcgtgggtctcgctaagatagaaaggtagttnnnnnnnnnnnnnnnnnnn--gaaacaatgttgaactatatatcacaaaactaagttgaac |
195 |
Q |
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| T |
3416380 |
attgtgcctcgtgggtctcgctaagatagaaaggtagttacaataataataatatataatgaaacaatgttgaactatatatcacaaaactaagttgaac |
3416479 |
T |
|
| Q |
196 |
ttcaaaagagagagatagaaacaagatagtaacgtgaatagtgatgaatacttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416480 |
ttcaaaagagagagatagaaacaagatagtaacgtgaatagtgatgaatacttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttc |
3416579 |
T |
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| Q |
296 |
attccttatctagcatctagccatatg |
322 |
Q |
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| T |
3416580 |
attccttatcttgcatctagccatatg |
3416606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 13441379 - 13441309
Alignment:
| Q |
252 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatg |
322 |
Q |
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| T |
13441379 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatg |
13441309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 13462568 - 13462493
Alignment:
| Q |
247 |
ttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatg |
322 |
Q |
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| T |
13462568 |
ttcagcaatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatg |
13462493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 13449544 - 13449472
Alignment:
| Q |
250 |
agcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatg |
322 |
Q |
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| T |
13449544 |
agcaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatg |
13449472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 12541856 - 12541782
Alignment:
| Q |
248 |
tcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatg |
322 |
Q |
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| T |
12541856 |
tcagaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatg |
12541782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 28386499 - 28386437
Alignment:
| Q |
260 |
ggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatg |
322 |
Q |
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||||||||||| ||| ||||| ||||| ||||||||||||| |||| ||||||| | |||||| |
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| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatg |
28386437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 48966508 - 48966450
Alignment:
| Q |
252 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagca |
310 |
Q |
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|||||| |||||||||| | |||||||||||||| ||||||||||||| ||||||||| |
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| T |
48966508 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagca |
48966450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 12482461 - 12482509
Alignment:
| Q |
252 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattcc |
300 |
Q |
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| T |
12482461 |
caatggaaggtgttgaagttgaacgaccattgaaacttcacttcattcc |
12482509 |
T |
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