View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16574_low_6 (Length: 294)
Name: NF16574_low_6
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_6 |
 | |
|
| [»] scaffold0121 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 39705964 - 39705697
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39705964 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcacggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
39705865 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39705864 |
atcaagattaggatgaccaaaggaaaatacctttccactagttgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
39705765 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39705764 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcat |
39705697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 11620129 - 11619888
Alignment:
| Q |
42 |
cggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| |||| |
|
|
| T |
11620129 |
cggtgagcctcaatgaattgcatggtaccattgttttggggtgggacccgagagagataacgatctatgaccgtatcaacattggggtggccaaatgaaa |
11620030 |
T |
|
| Q |
142 |
atacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttga |
241 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| || |
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|
| T |
11620029 |
ataccttctctctaggtgagaaaacaacaagagcaacatctgcaccacagagggtgcaaagctcactggcttttttgaagagcccactacggcgcttcga |
11619930 |
T |
|
| Q |
242 |
gaaagtcacttgcaggtggctctcgttgctcatctttttcat |
283 |
Q |
| |
|
|||||||||||||| || |||||||||| | || |||||||| |
|
|
| T |
11619929 |
gaaagtcacttgcaagttgctctcgttggtaatttttttcat |
11619888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 33238474 - 33238262
Alignment:
| Q |
75 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
174 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33238474 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33238375 |
T |
|
| Q |
175 |
cagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcat |
274 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || ||| || |||||||| |
|
|
| T |
33238374 |
caatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcat |
33238275 |
T |
|
| Q |
275 |
ctttttcatctca |
287 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33238274 |
ctttttcatctca |
33238262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 33246395 - 33246183
Alignment:
| Q |
75 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
174 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33246395 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33246296 |
T |
|
| Q |
175 |
cagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcat |
274 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || ||| || |||||||| |
|
|
| T |
33246295 |
caatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcat |
33246196 |
T |
|
| Q |
275 |
ctttttcatctca |
287 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33246195 |
ctttttcatctca |
33246183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 49048805 - 49048538
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
49048805 |
cattgagttcacgaacgttggcattgcggtgagcctcaatgagttgcatggtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgt |
49048706 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49048705 |
atcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
49048606 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcat |
283 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
49048605 |
ttgaagagtccgctacgacgctttgagaaagtcacttgtaggttgctctcgttgctcatctttttcat |
49048538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 49063857 - 49063587
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
49063857 |
cattgagttcacgcacgttggcattgcggtgagcctcaatgaattgcatggtgccatcgttttgggttgggatgagagaaagaaagcggtctatgaccgt |
49063758 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
49063757 |
atcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcaacatctgcaccacaaagggtgcaaagctcacttgccttc |
49063658 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctc |
286 |
Q |
| |
|
|||||||||||| || | ||||||||||||| ||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
49063657 |
ttgaagagcccgttatggtgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctc |
49063587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 47840745 - 47841015
Alignment:
| Q |
17 |
attgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgta |
116 |
Q |
| |
|
|||||| |||||||| || ||| |||||||||||||||||||||||||||| |||||||||| ||||| || |||| ||||| || |||||||||||| |
|
|
| T |
47840745 |
attgagctcacgcacattagcgctgcggtgagcctcaatgaattgcatggtaccgttgttttgtggtggcactcgagagagataacgatctatgaccgta |
47840844 |
T |
|
| Q |
117 |
tcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttct |
216 |
Q |
| |
|
|||| ||| || |||||||| ||||||||||| | | ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47840845 |
tcaacattggggtgaccaaatgaaaataccttctccccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagctcgctggctttct |
47840944 |
T |
|
| Q |
217 |
tgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
47840945 |
tgaaaagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctca |
47841015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 47830661 - 47830931
Alignment:
| Q |
17 |
attgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgta |
116 |
Q |
| |
|
|||||| || |||| ||||||| | |||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||| |
|
|
| T |
47830661 |
attgagctcgcgcaagttggcgctacggtgagcctcaatgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgta |
47830760 |
T |
|
| Q |
117 |
tcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttct |
216 |
Q |
| |
|
|||| ||| || || ||||| ||||| ||||| | | |||||||||||||||||||||| |||||||||| || || |||||||||||||||||||||| |
|
|
| T |
47830761 |
tcaacattgggttggccaaatgaaaacaccttctctccaggtgagaatacaacgagagcaacatctgcaccgcagagagtgcaaagctcactggctttct |
47830860 |
T |
|
| Q |
217 |
tgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
47830861 |
tgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctca |
47830931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 48005265 - 48005002
Alignment:
| Q |
24 |
tcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagat |
123 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| | |||||||||| || ||| |||| ||||| || |||||||| ||||||| || |
|
|
| T |
48005265 |
tcacgcacgttggcactacggtgagcctcaatgaattgcatggtaccattgttttgggatgagactcgagagagataacgatctatgactgtatcaacat |
48005166 |
T |
|
| Q |
124 |
taggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagag |
223 |
Q |
| |
|
| || || ||||| ||||||||||| | | ||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
48005165 |
tggggtggccaaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgcagagggtgcaaagctcactggctttcttgaagag |
48005066 |
T |
|
| Q |
224 |
cccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
48005065 |
accactacggcgcttcgagaaagtcacttgcaagtggctctcgttgctcatttttttaatctca |
48005002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 287
Target Start/End: Complemental strand, 2540701 - 2540441
Alignment:
| Q |
27 |
cgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattag |
126 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| | ||||||| | ||||||| |||| ||||| | |||||||||||||||| ||| | |
|
|
| T |
2540701 |
cgcacgttggcactacggtgagcctcaatgaattgcatggtaccattgtttttgagtgggactcgagagagataatgatctatgaccgtatcaacattgg |
2540602 |
T |
|
| Q |
127 |
gatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagccc |
226 |
Q |
| |
|
| || ||||| ||||||||||| | | ||||||||| | || ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
2540601 |
gttggccaaatgaaaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagccc |
2540502 |
T |
|
| Q |
227 |
gctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
2540501 |
actacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctca |
2540441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 41 - 287
Target Start/End: Complemental strand, 33477569 - 33477323
Alignment:
| Q |
41 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
140 |
Q |
| |
|
||||||||||||||||||||| | | | ||||||||||||||||| |||| ||||| |||||||||||||||| || || ||||| ||||| ||| |
|
|
| T |
33477569 |
gcggtgagcctcaatgaattgtaagatcctattgttttggggtgggacttgagatagataacggtctatgaccgtataaacatctggatggccaaatgaa |
33477470 |
T |
|
| Q |
141 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttg |
240 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| | |
|
|
| T |
33477469 |
aacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcgctggctttcttgaagaggccactacgacgcttcg |
33477370 |
T |
|
| Q |
241 |
agaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
33477369 |
agaaagtcacttgcaaattgctctcgttgctcatttttttcatctca |
33477323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 49045426 - 49045163
Alignment:
| Q |
24 |
tcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagat |
123 |
Q |
| |
|
|||| ||| |||||| | ||||||||||| ||||||| ||||| |||||||| |||||||| | | |||||| | |||| ||| ||||||| || |
|
|
| T |
49045426 |
tcacacactttggcgctacggtgagcctcgatgaattatgtggtgctattgttttgcggtgggaccccaaagagatagtgatcta-gactgtatcaacat |
49045328 |
T |
|
| Q |
124 |
taggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagag |
223 |
Q |
| |
|
| |||||||| || |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
49045327 |
ttggatgaccgaaagaaaataccttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaaattcactgactttcttgaagag |
49045228 |
T |
|
| Q |
224 |
cccgctacgacgctttgagaaagtcacttgcagg-tggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
49045227 |
cccactacgacgctttgagaaagtcacttgaaggtttgctctcgttgctcatctttttcatctca |
49045163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 287
Target Start/End: Complemental strand, 34506708 - 34506461
Alignment:
| Q |
40 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
139 |
Q |
| |
|
|||||||||| |||||||||||| | | | ||||||||||||||||| |||| |||||||| ||||||| ||| |||| || || || ||||| || |
|
|
| T |
34506708 |
tgcggtgagcgtcaatgaattgccagatcccattgttttggggtgggacctgagatagatagcgatctatgatcgtctcaacatctgggtgcccaaatga |
34506609 |
T |
|
| Q |
140 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgcttt |
239 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
34506608 |
aaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcactagctttcttgaagaggccactacggcgcttc |
34506509 |
T |
|
| Q |
240 |
gagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
34506508 |
gagaaagtcacttgcaaattgctctcgttgctcatttttttcatctca |
34506461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 47825973 - 47826208
Alignment:
| Q |
45 |
tgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaata |
144 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||| ||||||||| |||| ||||| || ||||||| |||||||| ||| || || ||||| ||||||| |
|
|
| T |
47825973 |
tgagccttaatgaattgcatggtaccattgtttttgggtgggacttgagagagataacgatctatgagcgtatcaacattgggttggccaaatgaaaata |
47826072 |
T |
|
| Q |
145 |
cctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaa |
244 |
Q |
| |
|
|||| | | ||||||||| |||||||||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
47826073 |
ccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagatggtacaaagctcactagctttcttgaagagcccactacggcgcttcgagaa |
47826172 |
T |
|
| Q |
245 |
agtcacttgcaggtggctctcgttgctcatcttttt |
280 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
47826173 |
agtcacttgcaagttgctctcgttgctcattttttt |
47826208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 33467509 - 33467272
Alignment:
| Q |
47 |
agcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacc |
146 |
Q |
| |
|
|||||||||||||||||| | | | ||||||| ||||| || ||| ||||| || |||||||||||||||| ||| || |||||||| ||||| ||| |
|
|
| T |
33467509 |
agcctcaatgaattgcatagggccactgttttgaggtggtacttgag--agataacgatctatgaccgtatcaacatttgggtgaccaaatgaaaacacc |
33467412 |
T |
|
| Q |
147 |
tttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaag |
246 |
Q |
| |
|
|| |||||||||||||||||| ||||||| || |||||||||||||||||||||||| || ||||||||||| || || | | | |||| ||||| | |
|
|
| T |
33467411 |
ttctcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcgctagctttcttgaataggccattgcaatgcttcgagaatg |
33467312 |
T |
|
| Q |
247 |
tcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
33467311 |
tcacttgcaagttgctctcgttgctcat-tttttcatctca |
33467272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 9757628 - 9757898
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |||||| ||| |||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
9757628 |
cattgagttcacgaacgttggcattgcggtgagcctcaatgagttgcatcgtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgt |
9757727 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
9757728 |
atcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttc |
9757827 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctc |
286 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9757828 |
ttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctc |
9757898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 20959966 - 20959696
Alignment:
| Q |
17 |
attgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgta |
116 |
Q |
| |
|
|||||| || |||||||||||| | |||||||||||||| ||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||| |
|
|
| T |
20959966 |
attgagctcgcgcacgttggcgcttcggtgagcctcaataaattgcatggtaccattgttttggggtgggacccgagagagataacgatctatgaccgta |
20959867 |
T |
|
| Q |
117 |
tcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttct |
216 |
Q |
| |
|
|||| ||| || || ||||||||||||||||| | | ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20959866 |
tcaacattggggtggccaaaggaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagctcactggctttct |
20959767 |
T |
|
| Q |
217 |
tgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||||||| || ||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
20959766 |
tgaagagaccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctca |
20959696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 20973869 - 20973599
Alignment:
| Q |
17 |
attgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgta |
116 |
Q |
| |
|
|||||| || |||||||||||| | |||||||||||||||||||||||||| | | ||||||||||||||| |||| ||||| || |||||||||| | |
|
|
| T |
20973869 |
attgagctcgcgcacgttggcgctacggtgagcctcaatgaattgcatggtaccatagttttggggtgggacccgagagagataacgatctatgaccgca |
20973770 |
T |
|
| Q |
117 |
tcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttct |
216 |
Q |
| |
|
|||||||| || || ||||| ||||||||||| | | ||||||||| |||| ||||||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
20973769 |
tcaagattggggtggccaaatgaaaataccttctctccaggtgagaaaacaatgagagcaacatctgcaccgcatagggtgcaaagctcactggctttct |
20973670 |
T |
|
| Q |
217 |
tgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||| || |||||||||||| || ||||| |||||| |
|
|
| T |
20973669 |
tgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctaatttttttgatctca |
20973599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 72 - 287
Target Start/End: Original strand, 9761460 - 9761675
Alignment:
| Q |
72 |
ttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacga |
171 |
Q |
| |
|
|||||||| |||||||| || | |||||||| ||||||| ||||||| ||| |||||||| || |||||||||||| |||||||||||||||||| | |
|
|
| T |
9761460 |
ttgttttgcggtgggacccgaaagagatagcgatctatgattgtatcaacatttggatgaccgaaagaaaataccttttgactaggtgagaatacaacta |
9761559 |
T |
|
| Q |
172 |
gagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgct |
271 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| | |
|
|
| T |
9761560 |
gagcaacatctacaccacaaagggtgcaaaactcactgactttcttgaagagcccgctacgacactttgagaaagtcacttggaggtttctctcgttatt |
9761659 |
T |
|
| Q |
272 |
catctttttcatctca |
287 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
9761660 |
catttttttcatctca |
9761675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 30496447 - 30496602
Alignment:
| Q |
129 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgc |
228 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| || |||| | ||| |||||||||||||||||||||||| || |||||||||||||| || | |
|
|
| T |
30496447 |
tgaccaaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaagctcgctagctttcttgaagagtccac |
30496546 |
T |
|
| Q |
229 |
tacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatc |
284 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
30496547 |
tatggcgcttcgagaaagtcacttgcaggttgctttcattgctcatctttttcatc |
30496602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 30496041 - 30495890
Alignment:
| Q |
107 |
tatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctca |
206 |
Q |
| |
|
||||||||| |||| | | || |||||||| |||||||||| ||| | ||||||||| || |||||| || ||||| |||| ||||||||| || |
|
|
| T |
30496041 |
tatgaccgtttcaacacttggctgaccaaataaaaataccttctcaccaagtgagaatataattagagcaagatatgcacgacaacgggtgcaaaacttg |
30495942 |
T |
|
| Q |
207 |
ctggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggt |
258 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
30495941 |
ctagctttcttgaagagcccactacgacgcttcgagaaagtcacttgcaggt |
30495890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 30536834 - 30536988
Alignment:
| Q |
132 |
ccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctac |
231 |
Q |
| |
|
||||| ||||||||||| ||| | ||||||||| || |||||| ||| ||| |||||||||||||||||||| || ||| ||||||||||||| ||| |
|
|
| T |
30536834 |
ccaaatgaaaataccttctcaccatgtgagaatataattagagcaacatatgcgccacaaagggtgcaaagctcgctagctatcttgaagagcccactat |
30536933 |
T |
|
| Q |
232 |
gacgctttgagaaagtcacttgcaggtggc-tctcgttgctcatctttttcatct |
285 |
Q |
| |
|
| |||| | |||||||||||||| | || | || |||||||| |||||||||| |
|
|
| T |
30536934 |
ggagcttcaaaaaagtcacttgcagattgcttttcattgctcatatttttcatct |
30536988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 30538984 - 30538852
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||| ||||| || | |||||| || |
|
|
| T |
30538984 |
cattgagtttgcgcactttggcgttacggtacgcctcaatgaattgcattatgccattgttttggggtgggatctgagagagataacgatttatgactgt |
30538885 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctt |
148 |
Q |
| |
|
|||| ||| || |||||||| ||||||||||| |
|
|
| T |
30538884 |
ttcaacatttgggtgaccaaatgaaaatacctt |
30538852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 39155 - 38885
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||||||||||||||||| ||| | |||||||||||||||||||| |||||||| | || ||||||||| |
|
|
| T |
39155 |
cattgagttcgcgcacgttggcattgcggttagcctcaatgaattgcatagtgccattgttttggggtgggacgagggaaagataacagtatatgaccgt |
39056 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
39055 |
atcaagattggggtgaccaaaggaaaatagctttccactaggtgagaatacaacaagagcagcatctgcaccacaaagggtgcaaatctcaccggctttc |
38956 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctc |
286 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
38955 |
ttgaagagcccgctacggcactttgagaaagtaacttgcaagttgctctcgtcactcatctttttcatctc |
38885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 286
Target Start/End: Complemental strand, 34899 - 34656
Alignment:
| Q |
43 |
ggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaa |
142 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| |||||||| || ||||| |
|
|
| T |
34899 |
ggtgagcctcaatgaattccatggtgctgttgttttgtggtgggaccccagagagatagcgatctataaccgtatcaacatttggatgaccgaaagaaaa |
34800 |
T |
|
| Q |
143 |
tacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgag |
242 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||| ||||| || |||||||||||||| |
|
|
| T |
34799 |
tactttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaagctcattgactttcttaaagagtcccctacgacgctttgac |
34700 |
T |
|
| Q |
243 |
aaagtcacttgcaggtggctctcgttgctcatctttttcatctc |
286 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
34699 |
aaagtcacttgaaggttactcttgttgctcatctttttcatctc |
34656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 16776528 - 16776798
Alignment:
| Q |
17 |
attgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgta |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||| |
|
|
| T |
16776528 |
attgagctcacacacgttggcgttgcggtgagcctcaatgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgta |
16776627 |
T |
|
| Q |
117 |
tcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttct |
216 |
Q |
| |
|
|||| ||| || || ||||| ||||||||||| | | ||||||||| ||||| |||||| ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
16776628 |
tcaatattgggttggccaaatgaaaataccttctccccaggtgagaaaacaacaagagcaacatctgcaccacagagagtgcaaagctcactggctttct |
16776727 |
T |
|
| Q |
217 |
tgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
16776728 |
tgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctca |
16776798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 22650476 - 22650239
Alignment:
| Q |
16 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
115 |
Q |
| |
|
||||||| |||| ||| |||| | | || ||||||||||| |||| ||||||| ||||||||| | |||||| ||| |||||||| ||||||||| | |
|
|
| T |
22650476 |
cattgagctcacacactttggtgctacgatgagcctcaataaattctatggtgttgttgttttgcgatgggaccccagagagatagcgatctatgaccat |
22650377 |
T |
|
| Q |
116 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttc |
215 |
Q |
| |
|
||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
22650376 |
atcaacatttggatgaccgaaagaaaatacctttttactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaagctcattgactttc |
22650277 |
T |
|
| Q |
216 |
ttgaagagcccgctacgacgctttgagaaagtcacttg |
253 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
22650276 |
ttgaagagtccgctacgatgctttaagaaagtcacttg |
22650239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 22652080 - 22651952
Alignment:
| Q |
158 |
tgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcagg |
257 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||| || ||| |||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22652080 |
tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagttcatcggattttttgaagagtccgctacgacgctttaagaaagttacttgcagg |
22651981 |
T |
|
| Q |
258 |
tggctctcgttgctcatctttttcatctc |
286 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
22651980 |
ttgctctcgttgctcatctttttcatctc |
22651952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 19988282 - 19988009
Alignment:
| Q |
14 |
atcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgacc |
113 |
Q |
| |
|
|||||| ||||||||||| | || || |||| ||| || ||||||||| || |||||| |||||||| ||| || ||||| ||||| || ||||||||| |
|
|
| T |
19988282 |
atcattaagttcacgcacactagcattacggtaagcttcgatgaattgcgtgatgtcgtcgttttgggttggaaccagagagagataacgatctatgacc |
19988183 |
T |
|
| Q |
114 |
gtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctt |
213 |
Q |
| |
|
|| |||| ||| || |||||||| ||||| ||||| ||| ||||||||||| || |||||| ||| ||||||||| |||||||||||||| || |||| |
|
|
| T |
19988182 |
gtttcaacatttgggtgaccaaatgaaaagaccttctcaccaggtgagaatataattagagcaacatatgcaccacacagggtgcaaagctcgctagctt |
19988083 |
T |
|
| Q |
214 |
tcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||| ||| || ||||||||||||||||||||| |
|
|
| T |
19988082 |
tcttgaagagcccactacgacgcttcgagaaagtcacttgaaggttgctttcattgctcatctttttcatctca |
19988009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 22700344 - 22700617
Alignment:
| Q |
14 |
atcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgacc |
113 |
Q |
| |
|
||||||||| || ||||| ||||| | |||| | |||||| ||||||||| |||| | ||||||||||| || |||| ||| | || ||||||||| |
|
|
| T |
22700344 |
atcattgagctcgcgcacattggctctacggtaatcctcaagtaattgcatgatgtcatcattttggggtggaacttgagagagaaaacgatctatgacc |
22700443 |
T |
|
| Q |
114 |
gtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctt |
213 |
Q |
| |
|
|| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| || |||||| || |||||||||||||||||||||||| || |||| |
|
|
| T |
22700444 |
gtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccacaaagggtgcaaagctcgctagctt |
22700543 |
T |
|
| Q |
214 |
tcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatctca |
287 |
Q |
| |
|
| || |||||||| |||| |||||||||||||||||||||| || ||| || ||||||||||||||||||||| |
|
|
| T |
22700544 |
ttttaaagagcccaatacggcgctttgagaaagtcacttgcaagttgctttcattgctcatctttttcatctca |
22700617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 22002063 - 22001851
Alignment:
| Q |
75 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
174 |
Q |
| |
|
||||||||| |||| |||| ||||| | ||||||||||| |||| ||| || |||||||| |||||||||||| |||| |||||||| | | |||| |
|
|
| T |
22002063 |
ttttggggtaggacctgagagagataatgatctatgaccgtttcaacatttgggtgaccaaatgaaaataccttttcacttggtgagaagattattagag |
22001964 |
T |
|
| Q |
175 |
cagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcat |
274 |
Q |
| |
|
|| ||| |||||||||||| |||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||| ||| ||| || |||||||| |
|
|
| T |
22001963 |
caacatatgcaccacaaagactgcaaagctcgctagctttcttgaagagcccactacggcgcttcgagaaagtcacttgtaggctgctttcattgctcat |
22001864 |
T |
|
| Q |
275 |
ctttttcatctca |
287 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22001863 |
ctttttcatctca |
22001851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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