View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_7 (Length: 271)
Name: NF16574_low_7
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 30402738 - 30402481
Alignment:
| Q |
13 |
attatactctacaaggcatatatagcatctgagaaattataaggttagcactggtaacagtaaaatatagctattataatcaaatattagtgaaacacct |
112 |
Q |
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| T |
30402738 |
attatactctacaaggcatatatagcatctgagaaattataaggttagcactggtaacagtaaaatatagctattataatcaaatattagtgaa-cacct |
30402640 |
T |
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| Q |
113 |
aagccagttaaagatcagaaaaacaaaaggtccgcaaacatacatgtacactaacgaataaataggcacgatgcacatacacatgaacacaatgcaagtg |
212 |
Q |
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| T |
30402639 |
aagccagctaaagatcagaaaaacaaaagctccgcaaacatacatgtacactaacgaataaataggcacgatgcacatacacatgaacacaatgcaagtg |
30402540 |
T |
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| Q |
213 |
ataacaagttataccaattacaagcgaaaatggcacacactacttcacaatacttatat |
271 |
Q |
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| T |
30402539 |
ataacaagttacaccaattacaagcgaaaatggcacacactatatcacaatacttatat |
30402481 |
T |
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