View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_8 (Length: 229)
Name: NF16574_low_8
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 8143214 - 8143018
Alignment:
| Q |
17 |
actaaggtgacactggaaattcgaaaaacaacaatggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgc |
116 |
Q |
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| T |
8143214 |
actaaggtgacactggaaattcgacaaacaacaatggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgc |
8143115 |
T |
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| Q |
117 |
agccaaaaagcagagtacttgggatatcttttcaatttgttaacgaaatccacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
213 |
Q |
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| T |
8143114 |
agccaaaaagcagagtacttgggatatctcttcaatttgttaacgaaatccacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
8143018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 8168036 - 8167840
Alignment:
| Q |
17 |
actaaggtgacactggaaattcgaaaaacaacaatggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgc |
116 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8168036 |
actaaggtgacattggaaattcgacaaacaacaatggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgc |
8167937 |
T |
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| Q |
117 |
agccaaaaagcagagtacttgggatatcttttcaatttgttaacgaaatccacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
213 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8167936 |
agccaaaaagcagagtacttgggatatctcttcaaattgttaacgaaatcgacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
8167840 |
T |
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