View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16574_low_9 (Length: 205)
Name: NF16574_low_9
Description: NF16574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16574_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 5714080 - 5714255
Alignment:
| Q |
15 |
atgaagtagttttcttttagtaaataaaaataaaatttgaatatgaaaaatatttctaatgagttttagtatattctaaagaaacataaaacttccctta |
114 |
Q |
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| T |
5714080 |
atgaagtagttttcttttagtaaataaaaataaaaattgaatatgacaaatatttctaatgagttttagtatattctacagaaacataaaacttccctta |
5714179 |
T |
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| Q |
115 |
aatccaaaagtgtttaaataagatgacatgagtctcttctaatttaaccaatgtcctgaatccaacaatgtacatg |
190 |
Q |
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| T |
5714180 |
aattcaaaagtgtttaaataagatgatatgagtctcttctaacttaaccaatgtcctgaattcaacaatgtacatg |
5714255 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 13395915 - 13395881
Alignment:
| Q |
135 |
agatgacatgagtctcttctaatttaaccaatgtc |
169 |
Q |
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| T |
13395915 |
agatgacatgagtctcttctagtttaaccaatgtc |
13395881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 22288214 - 22288271
Alignment:
| Q |
116 |
atccaaaagtgtttaaataagatgacatgagtctcttctaatttaaccaatgtcctga |
173 |
Q |
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| T |
22288214 |
atccaaaagcgcttagatgagatgacatgaatctcttctaacttaaccaaagtcctga |
22288271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 7451300 - 7451341
Alignment:
| Q |
127 |
tttaaataagatgacatgagtctcttctaatttaaccaatgt |
168 |
Q |
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| T |
7451300 |
tttagataagatgacacgagtctcttctaatttaatcaatgt |
7451341 |
T |
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