View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16575_high_12 (Length: 404)

Name: NF16575_high_12
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16575_high_12
NF16575_high_12
[»] chr2 (4 HSPs)
chr2 (177-384)||(29577942-29578150)
chr2 (1-180)||(13098271-13098450)
chr2 (1-179)||(29609015-29609193)
chr2 (142-170)||(1074224-1074252)
[»] chr1 (11 HSPs)
chr1 (1-178)||(11166817-11166994)
chr1 (1-177)||(7733547-7733723)
chr1 (1-180)||(37381548-37381727)
chr1 (1-178)||(41767807-41767984)
chr1 (1-177)||(46387873-46388049)
chr1 (1-180)||(4297201-4297380)
chr1 (1-176)||(7698840-7699013)
chr1 (49-179)||(50985593-50985723)
chr1 (142-175)||(41771182-41771215)
chr1 (142-178)||(7731070-7731106)
chr1 (142-178)||(46323221-46323257)
[»] chr3 (9 HSPs)
chr3 (1-179)||(26066820-26066998)
chr3 (1-171)||(42375051-42375221)
chr3 (1-171)||(42403765-42403935)
chr3 (1-178)||(12007168-12007346)
chr3 (22-180)||(52275641-52275800)
chr3 (142-178)||(54760427-54760463)
chr3 (27-116)||(15279965-15280054)
chr3 (143-180)||(36100514-36100551)
chr3 (142-178)||(21631380-21631416)
[»] chr5 (4 HSPs)
chr5 (1-178)||(20407557-20407734)
chr5 (142-179)||(125614-125651)
chr5 (142-178)||(20405091-20405127)
chr5 (142-175)||(34992316-34992349)
[»] chr4 (5 HSPs)
chr4 (13-180)||(36040685-36040852)
chr4 (142-179)||(54959896-54959933)
chr4 (142-178)||(37082652-37082688)
chr4 (142-178)||(14198528-14198564)
chr4 (23-75)||(54960000-54960052)
[»] chr8 (4 HSPs)
chr8 (1-170)||(37741967-37742136)
chr8 (1-178)||(44843182-44843359)
chr8 (1-118)||(28130667-28130784)
chr8 (96-178)||(28130785-28130867)
[»] chr7 (7 HSPs)
chr7 (1-179)||(46373385-46373556)
chr7 (55-178)||(29054603-29054726)
chr7 (142-178)||(34346801-34346837)
chr7 (142-178)||(46369670-46369706)
chr7 (22-75)||(22882968-22883021)
chr7 (142-179)||(22883053-22883090)
chr7 (139-179)||(293048-293088)
[»] chr6 (3 HSPs)
chr6 (1-179)||(18273071-18273249)
chr6 (142-178)||(30698603-30698639)
chr6 (142-170)||(5325873-5325901)
[»] scaffold2013 (1 HSPs)
scaffold2013 (142-178)||(722-758)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 177 - 384
Target Start/End: Complemental strand, 29578150 - 29577942
Alignment:
Q  177 atttggttcctctttttattcatgttttgaaattattatttcttttgcaagttctatgccttttgtcctttatt-acatttataaattgtcatttatgtg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29578150 atttggttcctctttttattcatgttttgaaattattatttcttttgcaagttctatgccttttgtcctttatttacatttataaattgtcatttatgtg 29578051  T
Q  276 gcattaagacatcctctctattaacacttaaattacacaaagtgcagggtttccagatgattgagcttcgaattgaccctcaagcgggtgttaatacctt 375  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  29578050 gcattaagacatcctttctattaacacttaaattacacaaagtgcagggtttctggatgattgagcttcgaattgaccctcaagcgggtgttaatacctt 29577951  T
Q  376 gaacgggat 384  Q
    |||| ||||    
T  29577950 gaacaggat 29577942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13098450 - 13098271
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  13098450 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 13098351  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 180  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13098350 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 13098271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 29609015 - 29609193
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  29609015 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacaaattttacccttact 29609114  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29609115 ttggtgatttgtcaattaactaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 29609193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 1074252 - 1074224
Alignment:
Q  142 tttccacaacatcttctcttcttatatta 170  Q
    |||||||||||||||||||||||||||||    
T  1074252 tttccacaacatcttctcttcttatatta 1074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11166817 - 11166994
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  11166817 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 11166916  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166917 ttggtgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 11166994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7733547 - 7733723
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  7733547 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 7733646  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 177  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7733647 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 7733723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 37381727 - 37381548
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  37381727 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 37381628  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 180  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37381627 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaatagagattt 37381548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 41767984 - 41767807
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  41767984 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 41767885  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41767884 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacattttctcttcttatattaagagagat 41767807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 46387873 - 46388049
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  46387873 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacaaattttacccttact 46387972  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 177  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46387973 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 46388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4297201 - 4297380
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  4297201 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 4297300  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 180  Q
    ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4297301 ttggtgatttgtcaattaaccagactggggcattaataggatttccacaacatcttctcttcttatatcaagagagattt 4297380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7699013 - 7698840
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  7699013 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 7698914  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagag 176  Q
    ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7698913 ttg-tgatttgtcaattaaccaggctggggcattaatagga-ttccacaacatcttctcttcttatattaagagag 7698840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 50985723 - 50985593
Alignment:
Q  49 ttgtgataatttggttgaataaagtaagctaaagacagattttacccttactttgatgatttgtcaattaatcaggctggggcattaataggatttccac 148  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  50985723 ttgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccac 50985624  T
Q  149 aacatcttctcttcttatattaagagagatt 179  Q
    |||||||||||||||||||||||||||||||    
T  50985623 aacatcttctcttcttatattaagagagatt 50985593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 41771215 - 41771182
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagaga 175  Q
    ||||||||||||||||||||||||||||||||||    
T  41771215 tttccacaacatcttctcttcttatattaagaga 41771182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 7731070 - 7731106
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7731070 tttccacaatatcttctcttcttatattaagagagat 7731106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 46323221 - 46323257
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46323221 tttccacaacatcttcccttcttatattaagagagat 46323257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 26066820 - 26066998
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  26066820 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 26066919  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26066920 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 26066998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 42375051 - 42375221
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42375051 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 42375150  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaa 171  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375151 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42375221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 42403765 - 42403935
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42403765 gaactaaactattagttatttgtagttatatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 42403864  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaa 171  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42403865 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12007346 - 12007168
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaa-gacagattttacccttac 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||    
T  12007346 gaactaaactattagttatttgtagttacatgacatcaacttagtgaattgtggtaatttggttgaataaagtaagttaaaagacagattttaccattac 12007247  T
Q  100 tttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    |||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12007246 tttggtgatttgtcaattaaccaggttggggcatgaataggatttccacaacatcttctcttcttatattaagagagat 12007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 52275800 - 52275641
Alignment:
Q  22 gtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttactttgatgatttgtcaatt-aat 120  Q
    ||||||||||||||||||| |||||||||||| | |||| ||| ||||||||||  |  |||||  ||||||||| | ||   ||||||| |||   ||     
T  52275800 gtagttacatgacatcatcatagttaattgtggtcatttagttcaataaagtaattttcagacaacttttaccctcaattgtgtgatttggcaagccaac 52275701  T
Q  121 caggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 180  Q
    |||  ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  52275700 cagcttggggtaataataggttttccacaacatcttctcttcttatattaagagagattt 52275641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 54760463 - 54760427
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  54760463 tttccacaacatcttctcttcttatattaagagagat 54760427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 15279965 - 15280054
Alignment:
Q  27 tacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttactttgatgatttgtcaat 116  Q
    ||||||||||||| ||||||| |  || | |||||||||| ||||||||  || |||||| ||||||| |||  ||| ||||||||||||    
T  15279965 tacatgacatcatgttagttattcatggttatttggttgattaaagtaatttatagacagcttttacctttaacttgctgatttgtcaat 15280054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 36100514 - 36100551
Alignment:
Q  143 ttccacaacatcttctcttcttatattaagagagattt 180  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  36100514 ttccacaacatcttcccttcttaaattaagagagattt 36100551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 21631416 - 21631380
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  21631416 tttctacaacatcttctcttcttacattaagagagat 21631380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 20407557 - 20407734
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  20407557 gaactaaactattagttatttgtagttacatgacatcatcttggttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttact 20407656  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407657 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 20407734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 125614 - 125651
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||||||||||||||||||||||||||||||||||||||    
T  125614 tttccacaacatcttctcttcttatattaagagagatt 125651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 20405091 - 20405127
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  20405091 tttccacaacatcttctcttcttatattaagagagat 20405127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 34992349 - 34992316
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagaga 175  Q
    ||||||||||||||||||||||||||||||||||    
T  34992349 tttccacaacatcttctcttcttatattaagaga 34992316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 36040685 - 36040852
Alignment:
Q  13 tagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttactttgatgatttgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  36040685 tagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgt 36040784  T
Q  113 caattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 180  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040785 caattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattt 36040852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 54959933 - 54959896
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54959933 tttccacaacatcttctcttcttatattaagagagatt 54959896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 37082688 - 37082652
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  37082688 tttccacaacatcttctcttcttatattaagagagat 37082652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 14198564 - 14198528
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14198564 tttccacaacatcttcccttcttatattaagagagat 14198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 54960052 - 54960000
Alignment:
Q  23 tagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaa 75  Q
    |||||||||||||||||| |||||||||||| | |||| ||  ||||||||||    
T  54960052 tagttacatgacatcatcatagttaattgtggtcatttagtacaataaagtaa 54960000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 37742136 - 37741967
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||    
T  37742136 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttagttgaataaagtaagttaaagacagattttacctttact 37742037  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatatta 170  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742036 ttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatatta 37741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 44843182 - 44843359
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||    
T  44843182 gaactaaactattagttatttatagttacatgacatcatcttagttaattgttgtaatttggttgaataaagtaagttaaagacaaattttacccttact 44843281  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44843282 ttggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttctcttcttatattaagagagat 44843359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28130667 - 28130784
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  ||||||||||||||||    
T  28130667 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaagcgagattttacccttact 28130766  T
Q  101 ttgatgatttgtcaatta 118  Q
    ||| ||||||||||||||    
T  28130767 ttggtgatttgtcaatta 28130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 28130785 - 28130867
Alignment:
Q  96 ttactttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28130785 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttttattaagagagat 28130867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 46373385 - 46373556
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    ||    
T  46373385 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttgtttgaataaagtaagttaaagacagattttacc----ct 46373480  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  46373481 ttggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttc---tcttatattaagagagatt 46373556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 29054603 - 29054726
Alignment:
Q  55 taatttggttgaataaagtaagctaaagacagattttacccttactttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatc 154  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29054603 taatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatc 29054702  T
Q  155 ttctcttcttatattaagagagat 178  Q
    ||||||||||||||||||||||||    
T  29054703 ttctcttcttatattaagagagat 29054726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 34346801 - 34346837
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  34346801 tttccacaacatcttctcttcttatattaagagagat 34346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 46369670 - 46369706
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  46369670 tttccacaacatcttctcttcttatattaagagagat 46369706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 22882968 - 22883021
Alignment:
Q  22 gtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaa 75  Q
    ||||||||||||||||||| |||||||||||| | |||| ||| ||||||||||    
T  22882968 gtagttacatgacatcatcatagttaattgtggtcatttagttcaataaagtaa 22883021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 22883053 - 22883090
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagatt 179  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22883053 tttccacaacatcttcccttcttatattaagagagatt 22883090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 293088 - 293048
Alignment:
Q  139 ggatttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  293088 ggatttccacaacatgttcttttcttatattaatagagatt 293048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 18273071 - 18273249
Alignment:
Q  1 gaactaaactattagttatttgtagttacatgacatcatcttagttaattgtgataatttggttgaataaagtaagctaaagacagattttacccttact 100  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  18273071 gaactaaactattaattctttatagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaaattaaagacagattttacccttact 18273170  T
Q  101 ttgatgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 179  Q
    ||||||||||||||||||| || ||  || ||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  18273171 ttgatgatttgtcaattaaccaagccaggacattaatagaatttccacaacatcttatctttttatattaagagagatt 18273249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 30698603 - 30698639
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  30698603 tttccacaacatcttctcttcttatattaagagagat 30698639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 5325901 - 5325873
Alignment:
Q  142 tttccacaacatcttctcttcttatatta 170  Q
    |||||||||||||||||||||||||||||    
T  5325901 tttccacaacatcttctcttcttatatta 5325873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 758 - 722
Alignment:
Q  142 tttccacaacatcttctcttcttatattaagagagat 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  758 tttccacaacatcttctcttcttatattaagagagat 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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