View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_high_28 (Length: 222)
Name: NF16575_high_28
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 46667604 - 46667433
Alignment:
| Q |
36 |
ttatgatagattaaatttaattcatttttattgaatttctatgaacaaacaaataataaactttcgataatatttacctcttgtcgctctataaagccat |
135 |
Q |
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| T |
46667604 |
ttatgatagattaaatttaattcatttttattgaatttctatgaacaaacaaataataa-ctttcaataatatttacctcttgtcgctctataaagccat |
46667506 |
T |
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| Q |
136 |
tatcattcaagtcaaagagcctaaatgaaactgcatcacaataccaaagtcacatttgataaggaacttaatg |
208 |
Q |
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| T |
46667505 |
tatcattcaagtcaaagagcctaaatgaaactgcatcacaataccaaagtcacatttgataaggaacttaatg |
46667433 |
T |
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