View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16575_high_4 (Length: 538)

Name: NF16575_high_4
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16575_high_4
NF16575_high_4
[»] chr6 (2 HSPs)
chr6 (126-526)||(18701127-18701527)
chr6 (20-90)||(18701578-18701648)
[»] chr5 (4 HSPs)
chr5 (176-526)||(40801555-40801905)
chr5 (20-100)||(40801329-40801409)
chr5 (58-100)||(40801438-40801480)
chr5 (58-100)||(40801509-40801551)
[»] chr8 (4 HSPs)
chr8 (376-526)||(23126087-23126237)
chr8 (192-365)||(5461023-5461196)
chr8 (466-515)||(29633943-29633992)
chr8 (466-515)||(40389878-40389927)
[»] chr2 (3 HSPs)
chr2 (126-257)||(24866526-24866657)
chr2 (471-514)||(24864512-24864555)
chr2 (422-468)||(24864640-24864685)
[»] chr4 (1 HSPs)
chr4 (126-287)||(50379400-50379561)
[»] scaffold0039 (1 HSPs)
scaffold0039 (466-510)||(83654-83698)
[»] chr3 (1 HSPs)
chr3 (324-411)||(6508037-6508122)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 126 - 526
Target Start/End: Complemental strand, 18701527 - 18701127
Alignment:
Q  126 aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18701527 aatctgcttattttgttctaaataatatttcagaaacacaataactcagagcgatatatagataccagagggaatattgtttcttaaggaatggcctgaa 18701428  T
Q  226 acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgtaatggaaaaactaagattgtgatatttgatatag 325  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18701427 atagagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttttgtaatggaaaatctaagattgtgatatttgatatag 18701328  T
Q  326 gcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttgg 425  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  18701327 gcagcaggactatgaaagccacatagagtcggtgttagaacgttggtctttctcttgtgaggaagagaaatgagaaaaggggatggtttgtcgtccttgg 18701228  T
Q  426 ccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc 525  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18701227 ccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc 18701128  T
Q  526 t 526  Q
    |    
T  18701127 t 18701127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 18701648 - 18701578
Alignment:
Q  20 taactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaatt 90  Q
    |||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  18701648 taactgccattagctaagatacacagagaggtttcctaatagttttaaatgtatgctacaagaattcaatt 18701578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 176 - 526
Target Start/End: Original strand, 40801555 - 40801905
Alignment:
Q  176 gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40801555 gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacagagtaataacaaaaatatgaagaaatacataatatcaacggagcatc 40801654  T
Q  276 acaacaatgtttctgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40801655 acaacaatgtttttgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt 40801754  T
Q  376 tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  40801755 tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtcattggccatcggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga 40801854  T
Q  476 agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct 526  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40801855 aaaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct 40801905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 40801329 - 40801409
Alignment:
Q  20 taactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaattgtaacaaggg 100  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40801329 taactgccatcaactaagatacacagagaggtttcttaatagttttaaatgtatgctacaagaatttaattgtaacaaggg 40801409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 40801438 - 40801480
Alignment:
Q  58 atagttttaaatgtatgctacaagaatttaattgtaacaaggg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  40801438 atagttttaaatgtatactacaagaatttaattgtaacaaggg 40801480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 40801509 - 40801551
Alignment:
Q  58 atagttttaaatgtatgctacaagaatttaattgtaacaaggg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  40801509 atagttttaaatgtatactacaagaatttaattgtaacaaggg 40801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 376 - 526
Target Start/End: Original strand, 23126087 - 23126237
Alignment:
Q  376 tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23126087 tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga 23126186  T
Q  476 agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct 526  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  23126187 agaaagtattcaaaatgattttctatttcatattatgatcaagtataatct 23126237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 365
Target Start/End: Complemental strand, 5461196 - 5461023
Alignment:
Q  192 agagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgt 291  Q
    ||||||||||| ||||||| ||||||| || |||||||||  || | ||||||| ||||||||    | |||| ||||||| |  |||||| |||| |||    
T  5461196 agagggattatggtttcttgaggaatgtcccgaaacaaagagatcaaaaaaataggaagaaatttggattatcgacggagctttgcaacaacgtttttgt 5461097  T
Q  292 aatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaa 365  Q
    |||||||||||| |||||| ||||| || || | ||| ||| ||||| |||||  || | ||| ||||||||||    
T  5461096 aatggaaaaactgagattgggatatatggtacatgcaacagtactataaaagcagcacatagtcggtgttggaa 5461023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 29633943 - 29633992
Alignment:
Q  466 ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc 515  Q
    |||||||||||||||||| ||||||  |||||||||||| ||||| ||||    
T  29633943 ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc 29633992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 40389878 - 40389927
Alignment:
Q  466 ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc 515  Q
    |||||||||||||||||| ||||||  |||||||||||| ||||| ||||    
T  40389878 ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc 40389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 24866657 - 24866526
Alignment:
Q  126 aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa 225  Q
    ||||| |||||||| |||||| |||||||||| ||||||||||||| | |||||||| ||||||  ||||||||||| |||| || |||||||||  | |    
T  24866657 aatcttcttattttattctaactaatatttcaaaaacacaataacttatagcaatatgtagatatgagagggattatggttttttgaggaatggctggga 24866558  T
Q  226 acaaagtaataacaaaaatatgaagaaataca 257  Q
    ||| ||  |||||||| |||||| ||||||||    
T  24866557 acatagagataacaaatatatgatgaaataca 24866526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 24864555 - 24864512
Alignment:
Q  471 caagaagaaagtgttcaaaatgattttctatttcatactatgat 514  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||    
T  24864555 caagaagaaagtgctcaaaaggattttctatttcttactatgat 24864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 24864685 - 24864640
Alignment:
Q  422 ttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatta 468  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||    
T  24864685 ttggccaccgacgaaa-gtaacaatttgcatcaaggttctaccatta 24864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 287
Target Start/End: Complemental strand, 50379561 - 50379400
Alignment:
Q  126 aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa 225  Q
    ||||| |||||||| |||||| |||||||||| ||||| | ||| |||||||  |||||| | |  ||||| ||||  || |||| |||||||| |||||    
T  50379561 aatcttcttattttattctaactaatatttcaaaaacaaagtaattgagagcggtatataaacatgagaggtattagggtatcttgaggaatggtctgaa 50379462  T
Q  226 acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt 287  Q
    |||  |  |||||||||||| ||||||||    ||||||||||||||||| |||||||||||    
T  50379461 acagtgagataacaaaaataggaagaaatcgggaatatcaacggagcatcgcaacaatgttt 50379400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 83654 - 83698
Alignment:
Q  466 ttaatcaagaagaaagtgttcaaaatgattttctatttcatacta 510  Q
    |||||||||||||||||| ||||||  |||||||||||| |||||    
T  83654 ttaatcaagaagaaagtgctcaaaagcattttctatttcctacta 83698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 411
Target Start/End: Complemental strand, 6508122 - 6508037
Alignment:
Q  324 aggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaagg 411  Q
    ||||||||| ||| ||| |||| |||||||| ||||| | ||  |||||||||| |||| |||  |||||||||| ||||||||||||    
T  6508122 aggcagcagtactgtgacagccgcatagagtcggtgtggaaa--ttggtctttcgccttcgagatagagaaatgaaaaaaggggaagg 6508037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University