View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_1 (Length: 643)
Name: NF16575_low_1
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 229 - 627
Target Start/End: Original strand, 41124872 - 41125270
Alignment:
| Q |
229 |
tgtgtataggcctccaaaacattagaaggtatacacacnnnnnnntattaaagaaatgacaactttatttttctcatattttacctaacatgtaatagta |
328 |
Q |
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| T |
41124872 |
tgtgtataggcctccaaaacattagaaggtatacacacaaaaaaatattaaagaaatgacaactttatttttctaatattttacctaacatgtaatagta |
41124971 |
T |
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| Q |
329 |
atacccttgttttttatgtgctgttttttccttctaattattctcttcaactcatctggttcacaaggaattgcaagtgctccaacttgagagaatccaa |
428 |
Q |
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| T |
41124972 |
atacccttgttgtttatgtgctgttttttccttctaatgattctcttcaactcatctggttcacaaggaattgcaagtgctccaacttgagagaatccaa |
41125071 |
T |
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| Q |
429 |
actcttcttcagcttgctttaacaatttcacaaattcaggatgatctaaatattccaattcaatacaaaatctttctgttttccacccttgtgttgcaat |
528 |
Q |
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| T |
41125072 |
actcttcttcagcttgctttaacaatttcacaaattcaggatgatctaaatattccaattcaatacaaaatctttctgttttccacccttgtgttgcaat |
41125171 |
T |
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| Q |
529 |
caccacaaaatgaccttgcttcacacctttttctgaccacaatattcttttctccaccattttcctcatcattattccaaaccctcctttccaaaatcc |
627 |
Q |
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| T |
41125172 |
caccacaaaatgaccttgcttcacacctttttctgaccacaatattcttttctccaccattttcctcatcattattccaaaccctcctttccaaaatcc |
41125270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 41124647 - 41124843
Alignment:
| Q |
4 |
agcaaaggtcctcattattcactaataataaccatttttacaagctaaacttacaagagaaggaaatgcatgctaattaatctagccctcttgcacctgc |
103 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41124647 |
agcaaaggtgctcattattcactaataataaccatttttacaagctaaacttacaagagaaggaaatgcatgctaattaatctagccctcttgcacctgc |
41124746 |
T |
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| Q |
104 |
aagttaaagttattttacttacattacaggggcacaaatacacaacaaaatcacaatcttattgcatgtcctctagctagctagttcactaattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41124747 |
aagttaaagttattttacttacattacaggggcacaaatacacaacaaaatcacaatcttattgcatgtcctctagctagctagttcactaattatt |
41124843 |
T |
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