View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_12 (Length: 405)
Name: NF16575_low_12
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 138 - 393
Target Start/End: Original strand, 38918709 - 38918971
Alignment:
| Q |
138 |
gaaggaattgatatcactatatatacatatggaaca----tgatagagagacaaaagacgagacgataacacaacacaataaacattgaagctgttccat |
233 |
Q |
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| T |
38918709 |
gaaggaattgatatcactatatatacatatggaacaaacatgatagagagacaaaagacgagacgataacacaacacaataaacattgaagctgttccat |
38918808 |
T |
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| Q |
234 |
aaacatcaataagatata---tttaagaatgaagttagaagttgaaataatctccaaagaaatcatcaaaccttcttctccaactccatcccatcttcgc |
330 |
Q |
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| T |
38918809 |
aaacatcaataagatatactatttaagaatgaagttagaagttgaaataatctccaaagaaatcatcaaaccttcttctccaactccatcccatcttcgc |
38918908 |
T |
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| Q |
331 |
cattaccaactctcctttctcgaccaaatcgcacctatggtttataaccctatcgtcctcttc |
393 |
Q |
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| T |
38918909 |
cattaccaactctcctttctcgaccaaatcgcgcctatggtttataaccctatcgtcctcttc |
38918971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 38918592 - 38918679
Alignment:
| Q |
16 |
gaaacaataattcaagaattctccaaaacaaaatacacaaatataaagcttacaagaaacctcgaatttaggaattgatttcaatttt |
103 |
Q |
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| T |
38918592 |
gaaacaataattcaagaattctccaaaacaaaatacacaaatataaagcttacaagaaacctcgaatttaggaattgatttcaatttt |
38918679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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