View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_14 (Length: 394)
Name: NF16575_low_14
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 23078337 - 23078704
Alignment:
| Q |
11 |
cagagatgaacattgagatgttgacaacaagaacatcgatttcggaaggggaaatagctgatcttgcaaggagttttgcaatgctgtcgtcgaaaaactc |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23078337 |
cagaggtgaacattgagatgttgacaacaagaacatcgatttcggaaggggaagtagctgatcttgcaaggagttttgcaatgctgtcgtcgaaaaactc |
23078436 |
T |
|
| Q |
111 |
ttccatctctgagatcccgtcgttcagtgttggggatgcttcgcggccttcaatgacatttcttggggcgtaagtttgctcgccaatgccgcaacttaca |
210 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23078437 |
ttccatctctgagatcccgtcgttcagcgttggtgatgcttcgcggccttcaatgacatttcttggggcgtaagtttgttcgccaatgccgcaacttaca |
23078536 |
T |
|
| Q |
211 |
atggctttgagcagaaacttgtactcatttagacccaaattttcagttcttctgattaatttaccacaaaactctgtccctagcattctatcttgtgttg |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
23078537 |
atggatttgagcagaaacttgtactcatttagacccaaattttctgttcttctgattaatttgccacaaaactcagtccctagcattctatcttgtgttg |
23078636 |
T |
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| Q |
311 |
gcttgtaacattggtaatctaatatgtaacactcttggtccctcttttgatctaatagtttccaaatt |
378 |
Q |
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| T |
23078637 |
gcttgtaacattggtaatctaatatgtaacactcttggtccctcttttgatctaatagtttccaaatt |
23078704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 374
Target Start/End: Original strand, 23073739 - 23074092
Alignment:
| Q |
21 |
cattgagatgttgacaacaagaacatcgatttcggaaggggaaatagctgatcttgcaaggagttttgcaatgctgtcgtcgaaaaactcttccatctct |
120 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
23073739 |
cattgagatgttgacgacaagaatgtcgatttcggaaggggaaatcgctgatctagctaggagtttcgcaatgctgtcgttgaaaaactcttccatctca |
23073838 |
T |
|
| Q |
121 |
gagatcccgtcgttcagtgttggggatgcttcgcggccttcaatgacatttcttggggcgtaagtttgctcgccaatgccgcaacttacaatggctttga |
220 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||||| |||||||| ||| ||||||||| |||||||| |
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| T |
23073839 |
gagatcccgtcgttcagtgttggtgatgattcgcggccttcaaagacatttcttggtgcgtaagtttgttcgccaattccggaacttacaacggctttga |
23073938 |
T |
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| Q |
221 |
gcagaaacttgtactcatttagacccaaattttcagttcttctgattaatttaccacaaaactctgtccctagcattctatcttgtgttggcttgtaaca |
320 |
Q |
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| T |
23073939 |
ggagaaatttgtactcatctagacccaaattttttgttcttctgattattttgccacaaaactctgtccctagcattctatcttgtgttggcttgtaaca |
23074038 |
T |
|
| Q |
321 |
ttggtaatctaatatgtaacactcttggtccctcttttgatctaatagtttcca |
374 |
Q |
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| T |
23074039 |
ttggtaatctaatatgtagcactcttggtccctcttttgatcgtatagtttcca |
23074092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 23110622 - 23110269
Alignment:
| Q |
21 |
cattgagatgttgacaacaagaacatcgatttcggaaggggaaatagctgatcttgcaaggagttttgcaatgctgtcgtcgaaaaactcttccatctct |
120 |
Q |
| |
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||||| ||||||||| ||||||||||| |||||||||||| |||| |||| |||| || |||||||||||||||||||| ||||| |||||||||||| |
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| T |
23110622 |
cattgcgatgttgacgacaagaacatcaatttcggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgtcaaaaaattcttccatctct |
23110523 |
T |
|
| Q |
121 |
gagatcccgtcgttcagtgttggggatgcttcgcggccttcaatgacatttcttggggcgtaagtttgctcgccaatgccgcaacttacaatggctttga |
220 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||||||||| ||||||| |
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| T |
23110522 |
gagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaataccacaacttacaatagctttga |
23110423 |
T |
|
| Q |
221 |
gcagaaacttgtactcatttagacccaaattttcagttcttctgattaatttaccacaaaactctgtccctagcattctatcttgtgttggcttgtaaca |
320 |
Q |
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| ||||| ||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23110422 |
ggagaaatttgtactcatttagacccaaattttgtgttcttgtgattactttgccacaaaactctgtccctagcattctatcttgtgttggcttgtaaca |
23110323 |
T |
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| Q |
321 |
ttggtaatctaatatgtaacactcttggtccctcttttgatctaatagtttcca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23110322 |
ttggtaatctaatatgtaacactcttggtccctcttttgatcgtatagtttcca |
23110269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 23113775 - 23113832
Alignment:
| Q |
314 |
tgtaacattggtaatctaatatgtaacactcttggtccctcttttgatctaatagttt |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23113775 |
tgtaacattggtaatctaatatgtaacactcttggtccctcttttgatcgaatagttt |
23113832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 41081120 - 41081165
Alignment:
| Q |
308 |
ttggcttgtaacattggtaatctaatatgtaacactcttggtccct |
353 |
Q |
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|||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
41081120 |
ttggcttgtaacattgatagtttaatatgtaacactcttggtccct |
41081165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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