View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_15 (Length: 378)
Name: NF16575_low_15
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 18840018 - 18840395
Alignment:
| Q |
1 |
actgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18840018 |
actgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacataaccaatctgtccaaaccaaaagctatgcctcc |
18840117 |
T |
|
| Q |
101 |
tgtatttgatatata--ataacaatcatcgataaaatcaactgtg--------------ttcaaatgaagatacaccggttaaatttcaaatgaaaatat |
184 |
Q |
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| T |
18840118 |
tgtatttgatatatataataacaatcatcgataaaatcaactgtgattttatagtagtgttcaaatgaagatacaccggttatatttcaaatgaaaatat |
18840217 |
T |
|
| Q |
185 |
ggttgtgcacagacaaatgctactctaataagataattcagtttatcgacaaagggaggaatggggctataaaccattttagaagacataccatgtggcg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18840218 |
ggttgtgcacagacaaatgctactctaataagataattcagtttatcgacaaagggaggaatggggctataaaccattttagaagacttaccatgtggcg |
18840317 |
T |
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| Q |
285 |
gagctcccatgtcaagagcttcaagaagatatccaaacttcgcttcagcctgaaaaagaaattataatgcataattca |
362 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18840318 |
gagcccccatatcaagagcttcaagaagatatccaaacttcgcttcagcctgaaaaagaaattataatgcataattca |
18840395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 50011482 - 50011651
Alignment:
| Q |
181 |
atatggttgtgcacagacaaatgctactctaataagataattcagtttatcgacaaagggaggaatggggctataaaccattttagaagacataccatgt |
280 |
Q |
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| T |
50011482 |
atatggttgtgcacagacaaatgctactctaataagataatccagtttatcgacaa-gggaggaatggggctataaatcattttagaagacttaccatgt |
50011580 |
T |
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| Q |
281 |
ggcggagctcccatgtcaagagcttcaagaagatatccaaacttcgcttcagcctgaaaaagaaattataatg |
353 |
Q |
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| T |
50011581 |
ggcggagcccccatgtcaagagcttcaagaagatatccaaacttagcttcagcctg--aaagaaattataatg |
50011651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 18851098 - 18851238
Alignment:
| Q |
1 |
actgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
18851098 |
actgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcatcataaccaatctgtccagaccaaaagctatgcctcc |
18851197 |
T |
|
| Q |
101 |
tgtatttgatatataataacaatcatcgataaaatcaactg |
141 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||| |
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| T |
18851198 |
tgcatttgatatataataacaattatcgataaaatcaactg |
18851238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 18851440 - 18851565
Alignment:
| Q |
236 |
aagggaggaatggggctataaaccattttagaagacataccatgtggcggagctcccatgtcaagagcttcaagaagatatccaaacttcgcttcagcct |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18851440 |
aagggaggaatggggctataaaccattttagaagatttaccatgtggcggagcccccatgtcaagagcttcaagaagatatccatacttcgcttcagcct |
18851539 |
T |
|
| Q |
336 |
gaaaaagaaattataatgcataattc |
361 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18851540 |
gaaaaagaaattataatgcataattc |
18851565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 50010775 - 50010917
Alignment:
| Q |
1 |
actgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
50010775 |
actgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacataaccaatctgtccagaccaaaagctatgcctcc |
50010874 |
T |
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| Q |
101 |
tgtatttgatatat-aataacaatcatcgataaaatcaactgt |
142 |
Q |
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| T |
50010875 |
tgcatttgatatataaataataatcatcgataaaatcaactgt |
50010917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 44108530 - 44108701
Alignment:
| Q |
181 |
atatggttgtgcacagacaaatgctactctaataagataattcagtttatcgacaaagggaggaatggggctataaaccattttagaagacataccatgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
44108530 |
atatggttgtgcacagacaaatgctactctaataagataatccagtttatcgacaa-gggaggaatggggctataaatcattttagaagacttaccatgt |
44108628 |
T |
|
| Q |
281 |
ggcggagctcccatgtcaagagcttcaagaagatatccaaacttcgcttcagcctgaaaaagaaattataatg |
353 |
Q |
| |
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|| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44108629 |
ggtggagcccccatgtcgagagcttcaagaagatatccaaacttagcttcagcctgaaaaagaaattataatg |
44108701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 44108052 - 44108167
Alignment:
| Q |
1 |
actgtgcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
44108052 |
actgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacataaccaatctgtccagaccaaaagctatgcctcc |
44108151 |
T |
|
| Q |
101 |
tgtatttgatatataa |
116 |
Q |
| |
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|| ||||||||||||| |
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| T |
44108152 |
tgcatttgatatataa |
44108167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 180 - 362
Target Start/End: Original strand, 51296303 - 51296477
Alignment:
| Q |
180 |
aatatggttgtgcacagacaaatgctactctaataagataattcagtttatcgacaaagggaggaatggggctataaaccattttagaagacataccatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
51296303 |
aatatggttgtgcacagacaaatgctactctaattagataattcagttcatcgacaag--------tggggctataaaccattttagaagaattaccatg |
51296394 |
T |
|
| Q |
280 |
tggcggagctcccatgtcaagagcttcaagaagatatccaaacttcgcttcagcctgaaaaagaaattataatgcataattca |
362 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51296395 |
tggcggagcccccatgtcaagagcttcaagaagatgtccaaacttcgcttcagcctgaaaaagaatttataatgcataattca |
51296477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 51295399 - 51295534
Alignment:
| Q |
6 |
gcagttgttgtttttgggaaagcaatgacatcactggttgaattagcaccagctagcaacataaccaatctgtctaaaccaaaagctatgcctcctgtat |
105 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |
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| T |
51295399 |
gcagttgatgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacataaccaatctgtccagaccaaaagctatgcctcctgcat |
51295498 |
T |
|
| Q |
106 |
ttgatatataataacaatcatcgataaaatcaactg |
141 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
51295499 |
ttgatatataataacaatcatggataaaatcaactg |
51295534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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