View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_17 (Length: 367)
Name: NF16575_low_17
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 43291810 - 43292144
Alignment:
| Q |
18 |
atgaagtatgcagggtataagccccaagatagcttaaatttaaatatgattttggattcgaatgaatgaattgaataattatcacaagttatttcgagat |
117 |
Q |
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| T |
43291810 |
atgaagtatgcagggtataagccacaatatagcttaaatttaaatacgattttggattcggatgaatgaattgaataattatcacaagttatttcgagat |
43291909 |
T |
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| Q |
118 |
ttgttggtttctttgtagtagacagttgtcacgaaagtgagctaggctcatcgttaagatagtcacagcctcacaggatctattataactgataatagtt |
217 |
Q |
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| T |
43291910 |
gtgttggtttctttgtagtagacagttgtcacgaaagtgagctaggctcatcgttaagatagtcacagcctcacaagatctattataactgataatagtt |
43292009 |
T |
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| Q |
218 |
tcatgacctgcataaatttattctttgtacaccacaacagctgctggtttgaaactcttactcggggttttcattcatttgaaacagtttgtaatttgtt |
317 |
Q |
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| T |
43292010 |
tcatgacctgcataaatttattctttgtacaccacaacagctgctggtttgaaactcttactcggggttttcattcatttgaaacagtttgtaatttgtt |
43292109 |
T |
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| Q |
318 |
aacaaaacaatcaatccatgtatattacaatagtg |
352 |
Q |
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| T |
43292110 |
aacaaaacaatcaatccatgtatattaccatagtg |
43292144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 43308831 - 43308868
Alignment:
| Q |
67 |
ttttggattcgaatgaatgaattgaataattatcacaa |
104 |
Q |
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| T |
43308831 |
ttttggattctgatgaatgaattgaataattatcacaa |
43308868 |
T |
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