View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_18 (Length: 353)
Name: NF16575_low_18
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 40901236 - 40901584
Alignment:
| Q |
1 |
tattccccaagccattaaatacaatataacctaaaggtgtagcctcgacctcaacctgctcgtaccatggagaattttttccaaaatttaaagagaagag |
100 |
Q |
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| T |
40901236 |
tattccccaagccattaaatacaatataacctaaaggtgtagcctcgacctcaacctgctcgtaccatggagaattttttccaaaatttaaagagaagag |
40901335 |
T |
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| Q |
101 |
taagggagagcatcttgacaggaggaggtggagttgtcgacgtggagagggatagcatcttgacgggaggaggcggaggttccgacgttgagagaaaccc |
200 |
Q |
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| T |
40901336 |
taagggagagcatcttgacaggaggaggtggagttgtcaacgtggagagggatagcatcttgacgggaggaggcggaggttcggacgttgagagaaaccc |
40901435 |
T |
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| Q |
201 |
tatctcctcccaagactttcttgataaggacatgttttgttgtcgacctagagaagtgaagtggagccggtaccgtcctggcattaatatattcgctctt |
300 |
Q |
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| T |
40901436 |
tatctcctcccaagactttcttgataaggacatgttttgttgtcgacctagagaagtgaagtggagccggtaccgtcctggcattaatatattcgctctt |
40901535 |
T |
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| Q |
301 |
ttacttgttcataaccacaataagaaagaggttctttttcttttctctc |
349 |
Q |
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| T |
40901536 |
ttacttgttcataaccacaataagaaagaggttctttttcttttctctc |
40901584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 18753033 - 18753081
Alignment:
| Q |
67 |
atggagaattttttccaaaatttaaagagaagagtaagggagagcatct |
115 |
Q |
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| T |
18753033 |
atggagaattttttccaaaatttgaagagaagagtaagggagagtatct |
18753081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 18753160 - 18753222
Alignment:
| Q |
248 |
ctagagaagtgaagtggagccggtaccgtcctggcattaatatattcgctcttttacttgttc |
310 |
Q |
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| T |
18753160 |
ctagagaagtgatatggagccggtactgtcctggaattaatatattggctcgtgtacttgttc |
18753222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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