View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_2 (Length: 597)
Name: NF16575_low_2
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 597
Target Start/End: Original strand, 42393318 - 42393898
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393318 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
42393417 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42393418 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacattagaagt |
42393517 |
T |
|
| Q |
215 |
ggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaacca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393518 |
ggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaacca |
42393617 |
T |
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| Q |
315 |
ctgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccacc |
414 |
Q |
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| T |
42393618 |
ctgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatgtgtctgatccacc |
42393717 |
T |
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| Q |
415 |
aagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacacgtgccttagggcacatgttagcattctcaaataaattttcatttgaatc |
514 |
Q |
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| T |
42393718 |
aagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacgcacgccttagggcacatgttagcattctcaaataaattttaatttgaatc |
42393817 |
T |
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| Q |
515 |
agagttaaacaaaccatataccgcnnnnnnngaagtgagaagacgcaaaacataaatgtgtaacaaaggtagcataccaggag |
597 |
Q |
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| T |
42393818 |
agagttaaacaaaccatataccgcaaaaaa--aagtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggag |
42393898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 42376766 - 42377182
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
114 |
Q |
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|||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||| |
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| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagt |
214 |
Q |
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||||||||||||||||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || |||| |
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| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagt |
42376965 |
T |
|
| Q |
215 |
ggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaacca |
314 |
Q |
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||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42376966 |
ggaagtgcagggtgtaaacgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttccaacca |
42377065 |
T |
|
| Q |
315 |
ctgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccacc |
414 |
Q |
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| T |
42377066 |
cagtttctaactcctcttgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatccacc |
42377165 |
T |
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| Q |
415 |
aagtaccatgtcctgtt |
431 |
Q |
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| T |
42377166 |
cactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 128 - 440
Target Start/End: Original strand, 42387228 - 42387539
Alignment:
| Q |
128 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggt |
227 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
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| Q |
228 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42387328 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttc |
42387427 |
T |
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| Q |
328 |
ctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcc |
427 |
Q |
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|||||||||||||||||||||| |||| |||| |||||||| ||| ||| ||||||||| || ||||||||||||||||||||||| | |||||||||| |
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| T |
42387428 |
ctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcc |
42387526 |
T |
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| Q |
428 |
tgttcatacaaac |
440 |
Q |
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|||||||| |||| |
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| T |
42387527 |
tgttcatataaac |
42387539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaacctt |
73 |
Q |
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|||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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