View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_20 (Length: 336)
Name: NF16575_low_20
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 4717809 - 4718054
Alignment:
| Q |
74 |
tttctaagttaaaagatgaaccaagaagggttccattttcttcatcttcttctaagtataaatcaagggttagagattatagtaaagataaagatttttc |
173 |
Q |
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| T |
4717809 |
tttctaagttaaaagatgaaccaagaagggttccattttcttcatcttcttctaagtataaatcaagggttagagattgtagtaaagataaagatttttc |
4717908 |
T |
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| Q |
174 |
aagtgtttctacaaggtgtaattgtagttattatggatatggtggtgatgctggttcaagttcaagttcatgttcaacttcttcattgcctaataggcaa |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4717909 |
aagtgtttctacaaggtgtaattgtagttattatggatatggtggtgatgctggttcaagttcaagttcatgttcaacttcttcattgcctaatagacaa |
4718008 |
T |
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| Q |
274 |
aagaaagggtttgttgaaccaaaaatgaggaacaaggtgaaaaaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4718009 |
aagaaagggtttgttgaaccaaaaatgaggaacaaggtgaaaaaac |
4718054 |
T |
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